genome.fa.s12276.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012276.1 Kokia drynarioides strain JFW-HI SEQ_127277, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  679560

Tables:   1   2   

This is table  1  of  2  ( 224 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25348--25380	5	6.6	5	86	13	50	60	0	39	0	0.97
38578--38630	24	2.2	24	96	0	97	66	7	11	15	1.44
39724--39773	16	3.1	16	80	13	59	6	34	0	60	1.21
53918--53968	21	2.4	22	83	6	61	66	7	1	23	1.28
61395--61457	29	2.2	29	97	2	119	53	9	26	9	1.64
62647--62676	12	2.5	12	100	0	60	50	16	10	23	1.75
69241--69286	19	2.5	19	83	16	62	13	10	10	65	1.48
77429--77466	15	2.7	14	84	11	51	10	10	10	68	1.40
80365--80393	12	2.3	13	94	5	51	79	0	20	0	0.74
84835--84881	17	2.6	17	86	6	58	51	0	0	48	1.00
90201--90238	13	3.0	13	84	3	51	0	15	0	84	0.63
91306--91341	12	3.2	12	85	14	51	0	38	0	61	0.96
106949--106978	14	2.2	14	94	5	53	40	10	20	30	1.85
115673--115723	24	2.1	24	96	0	93	37	7	13	41	1.74
118359--118409	23	2.2	23	100	0	102	35	3	25	35	1.75
119308--119349	20	2.0	20	86	9	57	33	0	26	40	1.56
123134--123180	16	3.1	15	93	6	78	27	19	8	44	1.79
130633--130729	48	2.0	48	100	0	194	29	18	22	28	1.97
136740--136764	12	2.1	12	100	0	50	44	24	0	32	1.54
139986--140018	5	6.6	5	86	13	50	0	18	0	81	0.68
141606--141643	16	2.2	18	86	9	53	34	5	5	55	1.45
145609--145710	31	3.4	30	81	12	104	63	1	10	23	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148789--148920	38	3.7	35	91	7	180	34	12	12	40	1.81
148810--148929	38	3.2	38	98	0	231	35	11	13	40	1.81
151540--151812	54	5.1	53	74	5	242	33	13	24	28	1.93
151540--151801	108	2.4	108	89	0	407	33	12	24	29	1.92
151979--152091	58	1.9	58	85	0	154	14	13	30	41	1.84
153023--153074	23	2.3	23	89	0	77	48	3	0	48	1.20
153031--153075	23	2.0	23	95	0	81	48	2	0	48	1.13
164086--165616	515	3.0	514	88	3	2258	21	16	15	46	1.84
166170--166196	5	5.4	5	100	0	54	37	0	22	40	1.54
168662--168692	16	1.9	16	93	0	53	35	3	12	48	1.58
171342--171582	73	3.3	71	78	6	236	26	19	29	24	1.99
171683--171815	39	3.4	39	78	8	153	42	21	13	21	1.87
171790--171893	39	2.7	39	78	0	109	38	21	17	23	1.93
171672--171816	78	1.8	78	88	1	202	42	22	13	21	1.88
174407--174695	51	5.6	51	85	2	339	30	23	14	31	1.94
175505--175537	2	16.5	2	100	0	66	48	0	0	51	1.00
198273--198312	18	2.3	18	86	4	55	22	15	7	55	1.65
201916--202750	422	2.0	422	97	0	1580	28	11	22	37	1.88
204813--205026	39	5.5	38	76	4	151	38	20	16	24	1.92
204797--204980	78	2.4	78	84	1	235	39	19	16	24	1.92
204813--205058	78	3.2	77	79	5	208	37	20	17	24	1.93
204841--205058	117	1.9	117	80	3	260	36	20	18	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
207138--207194	18	3.3	18	65	9	55	52	17	8	21	1.71
209266--209312	23	2.0	23	83	0	58	44	17	8	29	1.78
209273--209335	24	2.7	23	82	2	72	44	15	11	28	1.81
212875--212945	31	2.3	31	85	0	88	45	4	5	45	1.46
215536--215570	2	17.5	2	100	0	70	48	0	0	51	1.00
221591--221950	23	15.7	23	89	1	463	46	13	6	34	1.68
222386--222485	36	2.8	35	86	5	139	34	23	10	33	1.88
224300--224352	20	2.5	20	81	6	52	32	5	18	43	1.74
226870--226910	21	1.9	22	85	5	57	21	34	17	26	1.95
229267--229299	15	2.2	15	89	10	50	18	0	0	81	0.68
235577--235620	5	8.8	5	82	9	54	20	4	2	72	1.13
235576--235613	14	2.5	15	87	8	51	21	5	0	73	1.02
236600--236662	32	2.0	32	84	12	85	3	9	12	74	1.17
241952--241999	16	3.1	16	81	3	62	0	25	2	72	0.95
241956--241996	21	2.0	20	85	4	55	0	24	2	73	0.96
241956--241996	5	8.0	5	83	5	55	0	24	2	73	0.96
244160--244202	7	6.6	7	87	12	65	74	0	11	13	1.07
244166--244202	13	2.8	13	100	0	74	72	0	13	13	1.11
248550--248589	18	2.2	18	86	0	53	12	20	27	40	1.88
258629--258690	25	2.5	24	73	21	56	72	4	0	22	1.03
258629--258669	16	2.5	17	80	11	50	75	4	0	19	0.98
259346--259419	37	2.0	37	91	0	121	29	31	16	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259431--259549	38	3.2	38	72	11	102	34	19	13	32	1.90
259431--259549	37	3.2	38	74	9	102	34	19	13	32	1.90
259528--259585	26	2.3	26	84	3	73	32	17	20	29	1.95
262190--262289	48	2.1	48	98	0	191	29	14	27	30	1.95
289279--289457	43	4.1	43	80	6	184	36	8	20	33	1.84
289899--289969	21	3.4	21	70	14	74	18	7	18	56	1.63
289895--289988	42	2.2	42	96	0	170	18	7	20	54	1.67
300848--300917	20	3.4	20	78	4	68	50	10	7	32	1.63
303745--303787	16	2.8	16	85	3	61	55	9	2	32	1.44
323922--323947	3	8.7	3	100	0	52	69	0	0	30	0.89
324329--324388	28	2.1	29	90	3	95	50	15	15	20	1.79
324597--324745	43	3.5	42	84	8	178	34	19	12	34	1.89
324583--324745	84	1.9	85	80	8	188	35	20	11	33	1.88
324574--324750	43	4.1	42	82	7	164	34	21	10	33	1.87
331060--331135	25	3.1	25	70	11	59	38	7	13	40	1.73
331459--331508	13	3.6	13	83	8	55	16	2	6	76	1.08
343294--343345	24	2.2	24	100	0	104	30	30	17	21	1.96
349496--349525	13	2.4	12	89	10	51	83	0	16	0	0.65
354718--354758	20	2.0	20	100	0	82	34	14	24	26	1.94
357159--357212	17	3.2	17	78	0	63	20	16	9	53	1.70
369478--369531	26	2.1	26	92	0	90	29	25	16	27	1.97
369521--369592	37	1.9	38	83	13	96	38	15	20	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369634--369709	37	2.1	37	82	0	89	27	14	27	30	1.95
373047--373077	16	1.9	16	93	0	53	61	0	16	22	1.34
373871--373925	26	2.2	25	90	3	83	25	25	20	29	1.99
373931--374002	38	1.9	37	82	2	90	33	11	19	36	1.87
374457--374901	45	9.8	45	80	4	457	33	25	14	25	1.94
375690--375732	20	2.2	21	84	12	56	30	2	2	65	1.18
375828--375919	48	2.0	47	81	10	109	18	5	5	70	1.26
376024--376054	16	1.9	16	93	0	53	25	0	3	70	1.02
385238--385263	2	13.0	2	100	0	52	50	0	0	50	1.00
390465--390588	62	2.0	62	91	0	203	35	22	12	29	1.90
403506--403559	26	2.1	26	89	0	81	25	20	25	27	1.99
411880--411922	18	2.4	18	76	0	50	37	20	16	25	1.93
413633--413686	27	2.0	27	92	0	90	50	16	11	22	1.77
421722--421793	23	3.1	23	87	0	99	48	9	2	38	1.51
424271--424312	22	2.0	21	85	4	57	38	7	26	28	1.82
427278--427357	17	4.6	17	80	1	79	43	12	21	22	1.86
444987--445021	15	2.3	15	95	0	61	28	11	37	22	1.89
464637--464669	17	1.9	18	88	11	52	12	9	12	66	1.44
465239--465273	13	2.6	14	86	13	56	82	0	17	0	0.66
470236--470290	19	2.6	22	73	26	73	23	30	12	32	1.92
470727--470761	13	2.7	13	100	0	70	71	0	20	8	1.11
476756--476802	19	2.6	18	90	6	76	31	0	21	46	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488790--488998	106	2.0	107	94	1	366	43	6	9	40	1.64
488940--489171	121	1.9	126	86	7	343	43	6	9	40	1.62
491731--491807	17	4.6	17	75	16	54	25	32	19	22	1.97
492296--492402	27	3.8	27	80	11	126	24	26	25	24	2.00
492296--492399	14	7.4	14	69	10	77	24	26	25	23	2.00
495137--495789	147	4.4	146	86	5	834	41	11	3	43	1.57
496205--496232	3	9.3	3	100	0	56	64	0	0	35	0.94
496711--497050	42	8.1	42	88	1	484	35	23	18	22	1.95
497028--497069	22	1.9	22	95	0	75	54	4	21	19	1.62
496986--497113	64	2.0	64	90	0	202	42	17	20	20	1.90

Tables:   1   2