genome.fa.s12276.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012276.1 Kokia drynarioides strain JFW-HI SEQ_127277, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  679560

Tables:   1   2   

This is table  2  of  2  ( 224 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
496944--497154	106	2.0	106	91	0	341	39	20	20	19	1.93
496867--497240	190	2.0	190	87	2	536	37	20	19	21	1.94
496818--497268	232	1.9	232	87	1	654	37	21	19	21	1.95
497050--497265	42	5.1	42	85	3	301	36	22	19	21	1.95
497676--497750	21	3.5	21	79	16	91	0	13	6	80	0.91
497651--497749	44	2.2	44	82	8	112	1	18	7	73	1.11
497677--497750	15	5.1	14	74	19	55	0	13	6	79	0.91
497679--497745	26	2.6	27	79	13	77	0	13	7	79	0.94
497677--497750	8	10.3	7	75	13	55	0	13	6	79	0.91
505245--505289	23	2.1	20	84	12	54	55	11	4	28	1.54
505988--506073	41	2.1	41	95	0	154	34	9	12	43	1.75
506587--506616	13	2.3	13	94	0	51	66	0	13	20	1.24
506742--506799	11	5.4	11	74	15	50	65	0	3	31	1.09
510686--510714	3	9.7	3	100	0	58	34	0	0	65	0.93
515424--515521	46	2.1	46	88	3	144	20	18	15	45	1.85
517242--517317	34	2.2	34	90	0	134	57	2	13	26	1.49
519640--519671	9	3.6	9	91	0	55	56	3	0	40	1.15
524089--524196	31	3.5	31	70	7	85	17	15	16	50	1.79
524117--524224	29	3.6	29	74	7	117	22	13	12	50	1.76
524090--524211	61	2.0	61	96	0	226	19	14	16	49	1.80
527389--527579	19	10.1	19	70	17	105	57	6	2	34	1.36
527389--527432	17	2.4	18	88	7	63	61	4	2	31	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
527392--527472	29	2.9	27	83	8	92	61	7	1	29	1.31
527389--527547	9	16.8	9	73	15	108	59	6	2	31	1.35
528699--528723	2	12.5	2	100	0	50	52	0	0	48	1.00
537102--537142	12	3.5	12	78	15	50	75	0	7	17	1.02
540639--540675	19	1.9	19	94	0	65	29	8	13	48	1.71
541227--541309	37	2.2	37	86	0	121	28	25	13	32	1.93
541297--541350	26	2.1	25	93	3	90	31	22	22	24	1.98
543527--543574	17	2.8	17	77	0	51	22	16	10	50	1.76
543505--543574	34	2.1	34	88	0	104	22	20	8	48	1.76
544746--544855	37	3.0	37	79	2	105	30	24	13	30	1.94
544870--544923	26	2.1	26	100	0	108	29	22	20	27	1.98
549292--549324	17	2.0	17	88	5	50	54	9	12	24	1.66
553339--553401	16	3.6	16	71	19	54	9	15	38	36	1.81
553334--553595	37	7.0	36	80	9	292	12	14	32	40	1.84
553334--553595	114	2.3	111	87	4	366	12	14	32	40	1.84
554324--554349	2	13.0	2	100	0	52	50	0	0	50	1.00
566768--566952	27	6.9	27	81	2	203	25	15	22	37	1.93
568952--569625	337	2.0	337	97	0	1267	29	19	15	35	1.93
580256--580317	31	2.0	31	100	0	124	41	9	29	19	1.83
583583--583621	15	2.6	15	84	12	53	69	0	28	2	1.02
583589--583621	12	2.7	13	90	9	52	72	0	27	0	0.85
584029--584084	17	3.3	17	75	22	55	12	19	12	55	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589135--589183	2	24.5	2	95	0	89	48	2	0	48	1.12
589434--589665	28	8.2	28	78	6	170	27	21	8	42	1.81
589453--589654	112	1.8	112	79	8	241	26	21	8	42	1.82
589508--589702	28	7.0	28	76	2	194	23	22	10	43	1.85
589508--589728	56	3.9	56	86	1	282	24	22	10	42	1.84
590200--590238	21	1.9	20	84	5	51	43	23	0	33	1.54
593041--593140	14	7.1	14	72	15	71	30	22	6	42	1.77
593031--593134	15	7.3	14	70	13	61	29	22	3	44	1.70
593027--593188	29	5.7	28	77	10	150	27	22	6	43	1.77
593027--593241	56	3.8	55	80	5	164	26	23	6	42	1.79
593114--593307	28	7.1	28	70	15	88	23	21	11	44	1.84
593228--593279	22	2.4	22	96	0	95	23	9	15	51	1.72
593472--593510	21	1.9	20	85	15	53	41	7	0	51	1.31
594863--594887	13	1.9	13	100	0	50	12	8	16	64	1.49
595840--595880	20	2.0	21	86	13	59	68	2	0	29	1.03
595955--596030	29	2.6	29	85	6	100	55	2	6	35	1.40
596856--596885	9	3.4	9	95	4	53	20	0	0	80	0.72
596856--596965	17	6.5	17	66	16	59	28	0	3	67	1.14
596914--596947	8	4.1	8	92	7	59	38	0	0	61	0.96
596918--596953	15	2.3	15	90	9	54	30	0	0	69	0.89
603076--603131	29	1.9	29	85	7	78	46	1	5	46	1.36
603844--603883	21	1.9	21	84	0	53	52	2	2	42	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
604230--604290	21	2.6	24	82	12	65	60	3	1	34	1.23
604615--604694	31	2.5	31	73	16	76	45	1	1	52	1.16
606460--606628	50	3.3	50	86	3	223	33	14	13	39	1.84
606743--606865	55	2.2	54	91	5	185	37	4	13	43	1.66
610591--610817	50	4.5	50	87	2	267	37	12	11	37	1.81
613095--613173	35	2.2	35	86	10	108	64	8	2	24	1.35
614787--615300	49	10.4	49	74	5	243	18	21	18	42	1.90
614796--615266	98	4.8	96	76	7	290	18	21	18	41	1.90
614861--615271	147	2.8	146	79	4	405	19	20	18	41	1.91
614980--615227	97	2.5	99	79	11	280	21	21	16	40	1.91
614980--615261	99	2.9	98	77	11	283	21	21	16	40	1.91
616780--616859	36	2.2	36	95	2	142	37	21	5	36	1.75
617306--617672	200	1.9	195	81	6	456	26	26	18	28	1.98
620086--620196	49	2.2	50	88	3	179	20	14	16	48	1.80
635605--635629	4	6.2	4	100	0	50	52	24	0	24	1.48
636152--636179	6	4.7	6	100	0	56	32	32	0	35	1.58
655170--655207	20	1.9	20	84	10	51	68	10	13	7	1.39
665194--665290	20	4.8	20	76	11	81	31	6	12	49	1.65
665374--665422	23	2.2	23	85	3	64	42	6	2	48	1.39
668965--669180	114	1.9	115	87	3	319	28	18	17	35	1.94
668951--669171	56	3.8	58	81	12	247	28	19	18	33	1.95
669286--669454	60	2.9	59	76	14	197	27	20	18	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
669225--669454	116	2.0	117	87	4	340	27	19	18	34	1.95
669413--669491	40	2.0	41	94	2	142	37	6	17	37	1.76
670576--670630	17	3.5	17	73	19	64	63	3	10	21	1.42
670567--670645	30	2.6	30	85	4	95	64	2	7	25	1.33
670591--670673	30	2.8	30	86	0	103	63	3	7	25	1.36
670763--671090	161	2.0	161	98	0	640	23	18	30	27	1.97
671692--672118	86	5.0	86	88	6	640	48	4	5	42	1.45
672219--672267	12	3.8	12	75	19	53	40	8	0	51	1.32
672229--672263	17	2.1	16	89	5	52	48	8	0	42	1.33
672219--672276	28	2.1	28	86	0	80	43	10	0	46	1.38
676057--676174	62	1.9	59	83	11	150	35	19	21	23	1.96
676186--676346	87	1.9	86	86	1	232	34	15	13	36	1.86
678122--678159	8	4.3	9	84	15	53	68	0	0	31	0.90
678122--678158	17	2.2	17	90	9	58	67	0	0	32	0.91
679210--679272	13	4.9	13	69	18	51	44	4	12	38	1.64
679465--679523	24	2.5	25	78	13	63	50	1	0	47	1.11

Tables:   1   2

The End!