Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012297.1 Kokia drynarioides strain JFW-HI SEQ_127298, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  427781

Tables:   1   2   

This is table  2  of  2  ( 178 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
299075--299228
78
2.0
78
96
0
281
40
15
20
22
1.90
301329--301365
2
19.0
2
94
5
67
51
0
48
0
1.00
304817--304858
18
2.3
18
80
11
50
59
0
2
38
1.10
315831--315878
26
1.9
24
83
8
60
62
6
14
16
1.51
318953--319005
2
26.5
2
100
0
106
49
0
50
0
1.00
319690--319721
16
2.1
15
94
5
55
25
0
3
71
1.00
319662--319769
55
2.0
54
90
5
173
34
0
8
57
1.29
325975--326107
52
2.6
52
91
0
203
36
25
13
24
1.92
326996--327510
30
17.3
30
73
11
283
37
5
23
34
1.77
329134--329662
39
13.6
39
72
4
280
25
18
31
24
1.98
329032--329432
78
5.2
78
75
7
312
26
15
30
27
1.96
329069--329640
78
7.4
78
75
8
245
25
17
30
25
1.97
329868--329960
48
1.9
48
86
4
134
22
30
12
34
1.92
329984--330086
49
2.1
49
87
0
143
22
30
14
33
1.94
330482--330792
112
2.8
112
76
9
277
38
9
21
30
1.85
338726--338870
59
2.5
60
78
10
138
35
4
27
32
1.76
338764--339188
30
14.2
30
75
4
250
38
4
21
35
1.74
338764--339170
90
4.6
88
81
5
333
38
4
22
34
1.74
340044--340071
2
14.0
2
100
0
56
50
0
0
50
1.00
341174--341209
18
2.1
16
90
10
54
30
16
0
52
1.44
344615--344647
16
2.1
16
94
0
57
24
18
3
54
1.57
346180--346227
26
1.9
24
83
8
60
41
0
0
58
0.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
346215--346259
21
2.0
23
83
8
58
53
0
2
44
1.13
349869--349961
36
2.6
35
89
3
141
24
25
17
32
1.97
350278--350328
25
2.0
25
100
0
102
43
3
11
41
1.60
357938--358012
24
3.1
24
84
0
105
56
6
10
26
1.58
359026--359087
31
2.0
31
84
6
81
25
16
20
37
1.93
359047--359136
45
2.0
44
87
6
128
26
16
15
41
1.88
359577--359659
24
3.5
24
88
0
121
53
9
9
27
1.65
368426--368469
21
2.2
20
87
4
61
52
0
11
36
1.38
368445--368473
14
2.1
14
100
0
58
51
0
6
41
1.28
369654--369774
49
2.5
49
78
5
129
38
10
21
28
1.87
370971--371052
28
2.9
28
87
0
101
51
15
17
15
1.77
373267--373298
2
16.0
2
100
0
64
50
0
0
50
1.00
374042--374074
17
2.0
17
88
5
50
45
0
3
51
1.16
388012--388045
10
3.3
10
88
8
50
79
0
0
20
0.73
388342--388366
2
12.5
2
100
0
50
48
0
0
52
1.00
396894--396936
22
2.0
22
90
4
70
51
0
0
48
1.00
397236--397402
36
5.0
36
68
16
142
31
25
14
28
1.95
397233--397402
66
2.6
66
83
1
225
30
25
14
29
1.95
402344--402396
9
6.8
9
71
28
50
50
0
0
49
1.00
402340--402396
20
3.0
20
74
23
59
52
0
0
47
1.00
402349--402421
29
2.4
31
90
4
114
52
0
2
45
1.15
402349--402428
30
2.7
29
81
9
90
50
0
2
47
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
403554--403623
27
2.5
27
88
6
104
34
2
0
62
1.10
405586--405661
33
2.1
38
81
11
90
36
5
13
44
1.66
407492--407518
14
1.9
14
100
0
54
33
0
0
66
0.92
410090--410139
16
3.4
16
71
21
54
28
8
6
58
1.51
411641--411675
9
3.8
9
88
3
52
34
0
40
25
1.56
413452--413516
26
2.5
26
97
2
123
56
0
4
38
1.20
417302--417326
3
8.3
3
100
0
50
32
0
0
68
0.90
419652--419698
15
3.4
14
77
17
53
53
2
4
40
1.32
419940--419992
22
2.4
21
81
9
61
64
1
5
28
1.27
423328--423494
58
2.9
58
93
0
280
25
25
22
27
2.00
424992--425058
4
16.5
4
81
9
82
71
0
26
1
0.94
424992--425058
17
4.1
16
86
7
82
71
0
26
1
0.94
424993--425058
21
3.2
21
81
8
75
71
0
27
1
0.95
425098--425143
20
2.4
19
82
7
56
34
2
2
60
1.21

Tables:   1   2

The End!