genome.fa.s12315.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012315.1 Kokia drynarioides strain JFW-HI SEQ_127316, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60609

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
613--637	13	1.9	13	100	0	50	48	0	8	44	1.32
653--705	22	2.3	23	83	3	63	13	24	26	35	1.92
2118--2171	28	2.0	28	88	3	83	31	9	25	33	1.88
2154--2615	59	7.9	59	80	6	405	33	4	28	33	1.76
2158--2619	29	15.7	29	78	9	399	33	4	28	33	1.76
3751--3798	24	2.0	24	91	0	78	41	4	2	52	1.32
4482--4525	19	2.4	18	96	3	79	56	0	2	40	1.11
5012--5053	19	2.2	19	86	0	57	38	2	4	54	1.34
12790--12849	29	2.1	29	100	0	120	41	6	3	48	1.46
15704--15764	23	2.7	23	76	19	65	57	0	0	42	0.98
15704--15764	22	2.7	22	80	14	70	57	0	0	42	0.98
20953--21001	21	2.3	21	78	0	62	61	14	6	18	1.53
21120--21158	5	7.8	5	91	0	51	2	51	0	46	1.14
22041--22082	2	21.0	2	90	0	66	50	4	0	45	1.23
31986--32025	2	20.0	2	89	0	62	50	5	0	45	1.23
33665--33726	31	2.0	32	81	9	74	58	4	0	37	1.20
45166--45218	2	26.5	2	100	0	106	50	0	0	49	1.00
52133--52173	19	2.1	20	86	4	57	36	2	24	36	1.69
52692--52732	18	2.2	19	86	4	57	36	2	2	58	1.24
55593--55730	25	5.9	23	77	10	102	10	25	21	42	1.85
55606--55731	46	2.6	48	81	9	125	11	25	20	42	1.86
55613--55731	25	4.9	25	79	8	122	12	25	21	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55646--55756	50	2.3	50	79	6	120	15	27	18	39	1.90

Tables:   1

The End!