genome.fa.s12344.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012344.1 Kokia drynarioides strain JFW-HI SEQ_127346, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124484

Tables:   1   

This is table  1  of  1  ( 90 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
623--1269	201	3.2	201	93	0	1089	36	19	23	19	1.95
1610--1670	6	10.5	6	74	13	56	42	1	1	54	1.20
1611--1670	17	3.5	17	82	11	77	41	1	1	55	1.20
3636--3777	31	5.0	30	66	24	94	33	29	4	32	1.79
3674--3714	22	1.9	21	85	5	55	36	24	0	39	1.56
3694--3810	59	2.0	58	89	1	180	31	33	5	29	1.81
3696--3793	30	3.3	30	76	13	121	33	32	4	29	1.76
5290--6029	378	2.0	379	80	4	857	39	13	17	29	1.88
11270--11320	3	17.7	3	82	8	61	29	0	1	68	1.00
13848--13898	17	2.9	17	88	2	57	27	0	1	70	0.98
13844--13907	3	22.0	3	85	6	87	29	0	1	68	0.99
22664--22744	23	3.5	23	89	0	126	20	20	27	30	1.98
23921--24321	29	14.1	29	75	10	258	35	3	26	34	1.74
24052--24095	21	2.1	21	100	0	88	36	0	25	38	1.56
23994--24154	79	2.0	80	86	1	225	34	4	26	34	1.76
23969--24176	109	1.9	107	84	1	272	36	3	25	35	1.74
24073--24237	59	2.8	59	85	3	197	33	3	29	33	1.75
24100--24321	90	2.6	83	80	8	248	36	4	27	31	1.76
24240--24319	27	2.9	26	83	12	90	42	5	23	28	1.75
26120--26185	6	11.5	6	73	9	57	57	4	0	37	1.19
26084--26188	17	6.2	17	82	1	122	58	4	1	35	1.30
26142--26189	11	4.2	12	78	19	50	62	4	0	33	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26636--27399	385	2.0	379	83	4	962	28	17	14	39	1.88
27725--28482	378	2.0	375	83	5	965	29	16	12	40	1.86
35989--36031	9	4.4	9	80	13	50	83	0	16	0	0.64
35989--36032	10	4.4	10	77	11	54	84	0	15	0	0.63
40576--40750	96	1.8	96	81	7	221	36	14	20	29	1.92
40968--41030	28	2.2	28	82	0	72	28	11	28	31	1.91
41015--41086	29	2.5	30	77	6	76	38	4	23	33	1.74
41131--41410	30	9.4	29	79	8	271	32	1	29	36	1.66
41010--41293	58	4.8	57	77	12	179	32	4	28	34	1.78
41131--41411	89	3.2	88	84	4	350	32	1	29	37	1.66
41131--41420	59	4.9	58	82	9	300	32	1	28	37	1.66
42391--42421	15	2.1	15	93	0	53	38	0	0	61	0.96
43139--43205	18	3.8	17	74	5	71	58	7	0	34	1.26
43123--43204	35	2.3	35	79	8	94	53	6	1	39	1.34
43126--43205	36	2.2	36	86	4	108	53	6	1	38	1.34
51855--52820	39	24.8	39	71	5	292	25	31	18	25	1.97
51861--52461	78	7.7	78	83	2	634	24	31	18	24	1.97
51858--52580	117	6.2	117	74	7	412	24	31	18	25	1.97
51884--52659	196	4.0	195	74	5	539	25	31	17	26	1.97
52214--52734	274	1.9	273	86	2	740	24	30	17	26	1.97
51858--52934	39	27.6	39	69	9	192	24	31	18	25	1.97
51856--52962	78	14.2	79	76	8	535	25	30	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52856--52963	39	2.8	40	85	2	121	25	33	16	24	1.96
53431--53463	17	1.9	17	88	11	50	39	0	6	54	1.25
55094--55134	18	2.3	18	100	0	82	29	17	0	53	1.44
55120--55536	29	14.4	29	76	6	267	33	25	3	37	1.73
55120--55455	88	3.9	87	81	8	341	33	26	3	36	1.73
55120--55527	117	3.5	117	80	7	390	34	25	3	36	1.73
58208--60893	958	2.8	955	86	3	3641	36	14	16	32	1.89
61047--63466	968	2.5	950	80	7	2782	37	13	15	33	1.87
66756--66833	17	4.5	17	78	9	77	39	0	5	55	1.22
66787--66833	23	2.0	23	88	8	69	42	0	4	53	1.20
66756--66866	52	2.1	52	85	3	143	42	1	3	52	1.29
66787--66864	17	4.5	17	76	9	68	46	2	2	48	1.29
67619--67657	21	1.9	20	89	5	60	56	7	2	33	1.41
68594--69040	29	15.2	30	72	10	300	36	25	4	33	1.77
68587--69102	59	8.8	58	78	7	381	35	25	5	34	1.79
68594--69040	118	3.8	118	80	7	464	36	25	4	33	1.77
68997--69112	60	1.9	59	89	1	178	28	25	8	37	1.85
68997--69207	59	3.6	59	77	9	205	29	23	8	37	1.85
75105--75140	12	3.0	12	95	0	63	25	16	2	55	1.55
76319--76479	81	2.0	81	86	2	225	37	16	16	29	1.91
76874--76914	19	2.2	19	86	4	57	80	2	17	0	0.82
77872--78041	49	3.4	49	75	10	150	30	15	34	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77867--78156	99	2.9	99	78	7	266	34	15	30	19	1.93
80049--80159	25	4.7	22	79	11	105	14	30	18	36	1.91
80058--80163	47	2.2	48	88	6	155	15	29	17	37	1.91
87117--87205	23	3.8	23	84	14	119	11	28	22	38	1.88
87115--87232	48	2.5	47	81	8	141	16	28	18	36	1.92
87917--88913	114	8.8	114	87	1	1329	33	17	25	23	1.96
90663--90722	4	15.0	4	78	0	66	35	0	0	65	0.93
90662--90722	8	7.6	8	83	0	77	36	0	0	63	0.94
90662--90722	24	2.5	24	100	0	122	36	0	0	63	0.94
94938--95095	81	2.0	81	93	0	271	36	16	17	29	1.92
96514--96680	49	3.4	48	72	11	126	32	15	32	19	1.93
96977--97592	114	5.4	114	86	1	799	34	17	24	23	1.96
101132--102267	379	3.0	371	80	6	1182	39	12	17	30	1.87
101132--102267	378	3.0	375	80	5	1123	39	12	17	30	1.87
111178--111215	17	2.3	17	86	4	51	15	0	2	81	0.80
111785--111833	15	3.3	15	82	2	55	83	0	12	4	0.77
111785--111823	16	2.4	16	87	8	53	84	0	10	5	0.76
115179--115207	14	2.1	14	100	0	58	51	20	13	13	1.75
115420--116121	359	2.0	359	83	4	907	37	15	16	30	1.90
116487--118821	959	2.4	952	83	2	2890	36	14	15	33	1.88
119929--120793	429	2.0	429	83	2	1085	34	14	13	37	1.85
120847--121947	380	2.9	378	82	5	1231	39	13	16	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122153--122859	378	1.9	378	80	6	833	40	13	17	28	1.88
124131--124250	60	2.0	60	100	0	240	36	21	11	30	1.89

Tables:   1

The End!