genome.fa.s12420.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012420.1 Kokia drynarioides strain JFW-HI SEQ_127424, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133036

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4342--4372	16	2.0	15	93	6	53	22	6	32	38	1.80
4523--4609	11	7.7	11	68	14	52	70	1	24	4	1.13
4547--4603	31	1.9	28	86	10	78	64	1	29	3	1.20
7548--7580	17	1.9	17	93	0	57	57	12	15	15	1.65
12563--12609	24	2.0	24	87	8	69	53	10	10	25	1.68
15814--15852	17	2.3	17	100	0	78	17	20	5	56	1.60
27353--27387	19	1.9	17	88	11	52	80	0	17	2	0.84
39913--39964	19	2.6	19	81	6	59	44	0	34	21	1.52
42754--42790	18	2.0	19	89	5	58	27	16	16	40	1.89
63167--63304	25	5.4	25	75	10	93	23	14	24	36	1.93
63160--63324	77	2.2	77	82	8	196	23	14	23	38	1.91
63219--63354	25	5.4	25	78	8	123	22	14	25	38	1.92
66608--67074	23	20.3	23	85	1	632	46	14	5	33	1.66
68789--68958	48	3.5	48	94	0	286	22	8	13	55	1.66
76005--76085	30	2.7	31	81	7	96	24	12	18	44	1.84
85111--85218	41	2.6	41	95	0	189	14	29	24	31	1.95
85111--85176	24	3.0	24	59	28	56	13	31	24	30	1.94
86061--86152	46	2.0	46	97	0	175	25	17	13	44	1.84
86426--92112	215	26.5	217	79	4	5598	41	13	16	28	1.86
86426--92112	857	6.6	857	85	3	6207	41	13	16	28	1.86
102694--102731	19	2.0	19	90	10	60	10	10	5	73	1.23
103057--106606	216	16.6	215	81	3	3685	41	13	16	28	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
103057--106608	643	5.5	640	81	4	3990	41	13	16	28	1.86
115344--115395	21	2.5	21	84	6	70	28	28	15	26	1.96
118678--118708	16	1.9	16	93	0	53	6	16	32	45	1.72
127000--127030	16	1.9	16	100	0	62	25	12	32	29	1.93
130023--130088	31	2.1	31	100	0	132	21	13	15	50	1.78

Tables:   1

The End!