genome.fa.s12445.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012445.1 Kokia drynarioides strain JFW-HI SEQ_127449, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104294

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--37	2	18.5	2	100	0	74	48	0	0	51	1.00
1177--1263	39	2.2	39	95	0	156	52	16	5	25	1.65
1588--7727	429	14.3	426	82	3	6842	40	13	16	28	1.87
1588--7727	215	28.7	215	83	3	6958	40	13	16	28	1.87
9526--10315	216	3.7	212	83	4	935	41	14	16	26	1.87
18290--18538	50	5.0	50	81	1	302	21	25	16	36	1.94
18385--18479	26	3.7	26	76	5	95	22	26	14	36	1.93
30951--31068	52	2.3	52	95	0	209	31	26	17	24	1.97
31743--32032	52	5.6	52	90	0	427	32	22	13	31	1.93
32795--32873	40	2.0	39	97	2	149	30	15	5	49	1.66
39912--39955	22	2.0	22	95	0	79	43	13	15	27	1.85
44557--44595	6	6.5	6	87	0	51	46	0	30	23	1.53
53035--53069	12	2.9	12	86	0	52	74	0	5	20	1.02
53471--53540	35	2.0	35	97	0	131	35	20	8	35	1.83
62657--62695	15	2.7	15	96	4	71	66	0	25	7	1.18
66990--67033	21	2.1	21	83	8	54	59	6	0	34	1.24
69323--69377	27	2.0	27	89	0	83	23	25	16	34	1.95
70243--70287	20	2.2	21	84	11	58	33	0	4	62	1.15
70391--70450	32	1.9	31	83	16	79	58	11	10	20	1.61
74116--74141	12	2.2	12	100	0	52	42	15	0	42	1.47
76416--76450	8	4.4	8	100	0	70	74	0	0	25	0.82
77761--77928	83	2.0	83	88	0	246	31	17	18	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79951--80221	43	6.3	42	72	8	170	36	19	19	25	1.95
80020--80218	86	2.3	86	83	5	224	35	20	19	25	1.96
79977--80220	129	1.9	129	83	3	321	35	19	19	25	1.96
81229--81287	25	2.3	26	91	5	102	37	22	28	11	1.89
81358--81405	24	1.9	26	84	16	66	31	22	0	45	1.53
87074--87107	17	1.9	18	94	5	61	47	0	0	52	1.00
91128--91289	26	6.2	26	80	0	180	29	20	16	33	1.94
91133--91289	78	2.0	78	86	0	215	29	21	16	32	1.95
91836--92172	169	2.0	167	95	1	611	43	18	10	28	1.83
92185--92210	3	8.7	3	100	0	52	65	0	0	34	0.93
93317--93404	35	2.5	35	81	0	104	44	23	22	9	1.81
93494--93563	9	7.6	9	77	17	72	30	0	4	65	1.11
93494--93563	28	2.5	27	78	19	81	30	0	4	65	1.11
93493--93564	10	7.6	10	71	12	62	29	0	4	66	1.10
93631--93679	10	5.0	10	82	5	55	22	2	4	71	1.13
93631--93671	19	2.2	19	90	0	64	21	0	4	73	1.02
93744--93783	21	1.9	21	85	10	55	32	0	7	60	1.25
93750--93809	30	2.0	30	81	12	70	40	1	5	53	1.33
100855--101223	75	5.2	74	64	22	209	42	5	4	47	1.48
100811--101340	138	3.8	138	92	1	839	41	6	5	46	1.53
101419--101452	17	2.1	16	88	5	50	52	8	0	38	1.33
102422--102607	96	1.9	96	81	8	227	37	14	18	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102790--102846	27	2.1	27	100	0	114	47	7	28	17	1.73
102854--102913	28	2.1	28	84	0	75	23	13	33	30	1.93
102923--103360	60	7.4	59	78	10	323	32	5	27	34	1.80
103078--103370	30	9.7	30	84	6	317	33	4	26	36	1.76
104217--104285	34	2.1	32	84	10	86	56	1	5	36	1.32

Tables:   1

The End!