genome.fa.s12489.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012489.1 Kokia drynarioides strain JFW-HI SEQ_127493, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  183384

Tables:   1   

This is table  1  of  1  ( 80 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--405	217	1.9	217	82	3	519	41	13	16	27	1.86
252--573	175	1.9	173	81	8	404	42	12	15	29	1.84
35--797	391	2.0	390	84	4	1002	42	12	16	28	1.85
459--1361	217	4.2	215	76	6	779	40	13	17	28	1.87
1782--4957	216	14.7	216	79	5	3042	40	13	16	28	1.87
1797--4957	432	7.3	432	81	4	3523	40	13	16	28	1.87
4780--5137	180	2.0	181	84	4	474	40	14	17	26	1.89
4949--12447	216	34.9	215	74	9	4895	40	13	17	29	1.87
5946--5987	21	2.0	21	100	0	84	52	23	19	4	1.65
5967--12447	431	15.2	428	77	8	5404	40	12	17	29	1.87
4974--12447	647	11.6	643	76	9	5335	40	12	17	29	1.87
13502--13666	80	2.1	79	90	3	269	27	13	21	36	1.92
14108--14336	48	4.8	48	86	2	307	52	13	8	24	1.68
14108--14336	97	2.4	95	88	2	314	52	13	8	24	1.68
15107--15219	48	2.4	48	87	0	163	52	13	9	24	1.70
22059--22086	12	2.3	12	100	0	56	39	25	7	28	1.82
24678--26021	216	6.2	215	83	3	1527	40	13	17	28	1.88
24668--26021	431	3.1	428	82	3	1642	40	14	17	28	1.88
29550--29574	8	3.1	8	100	0	50	48	0	36	16	1.46
41691--41834	66	2.2	66	100	0	288	46	23	18	11	1.81
45363--45407	22	2.0	22	86	0	63	13	11	55	20	1.68
46573--46707	19	7.3	19	72	13	59	39	0	3	57	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46603--46690	19	4.6	19	78	13	67	44	0	3	52	1.18
46627--46692	20	3.4	20	85	10	84	42	0	6	51	1.26
46619--46692	38	1.9	39	91	2	123	43	0	5	51	1.24
47025--47089	21	3.3	19	78	19	64	33	1	6	58	1.32
53997--54044	25	1.9	25	83	8	62	56	12	12	18	1.67
60093--60123	16	1.9	16	93	0	53	0	22	0	77	0.77
63067--63105	21	1.9	21	89	5	62	66	7	12	12	1.43
69388--69426	13	2.9	14	80	7	53	5	28	0	66	1.12
69406--69463	31	1.9	31	83	13	77	3	25	1	68	1.14
76222--76265	12	3.7	12	82	8	54	79	0	2	18	0.83
76332--76384	4	12.8	4	77	15	54	77	0	1	20	0.87
76332--76380	18	2.6	18	78	15	55	77	0	2	20	0.87
77368--77397	16	1.9	15	93	6	51	3	16	0	80	0.85
79650--79705	24	2.3	24	90	0	85	8	17	3	69	1.29
81076--81344	50	5.4	50	68	5	166	25	18	18	37	1.94
81078--81663	101	5.8	98	79	7	444	26	17	18	37	1.93
81122--81603	50	9.5	50	68	12	245	25	18	18	36	1.94
81060--81719	203	3.3	201	78	5	609	26	18	18	37	1.93
82242--82339	49	2.1	45	81	9	115	24	10	12	53	1.69
82239--82345	48	2.2	49	88	1	153	22	9	13	55	1.66
82322--82368	23	2.0	23	95	0	85	19	8	14	57	1.63
82280--82416	71	1.9	71	93	0	238	21	8	15	54	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82345--82436	48	1.9	48	95	0	166	25	8	14	52	1.70
90479--90514	16	2.3	15	90	4	54	5	16	0	77	0.94
91097--91137	19	2.2	18	95	4	73	60	12	14	12	1.58
93070--93167	49	2.0	49	100	0	196	26	18	18	36	1.94
93398--93519	45	2.7	45	82	2	138	31	18	24	24	1.98
93439--93536	45	2.2	44	78	5	106	32	17	25	24	1.97
93907--93983	19	4.1	19	86	3	111	36	2	23	37	1.69
93910--93983	37	2.0	37	94	0	130	36	2	22	37	1.69
107430--107459	14	2.1	14	93	0	51	13	10	3	73	1.21
113815--113856	17	2.5	18	85	11	54	4	16	2	76	1.07
116325--116423	39	2.5	39	90	0	153	54	15	4	26	1.58
119482--119539	12	4.5	13	78	8	57	3	27	1	67	1.17
121988--122038	17	3.0	17	85	5	68	33	37	15	13	1.87
126958--126996	7	5.0	8	85	14	55	10	0	0	89	0.48
126958--126996	16	2.6	16	92	8	64	10	0	0	89	0.48
130150--130190	18	2.3	18	87	8	57	26	2	0	70	0.99
131631--131675	20	2.2	20	92	0	72	8	35	24	31	1.86
137120--137162	11	3.8	12	84	9	54	32	41	13	11	1.81
144547--145179	38	16.2	37	70	14	327	31	24	18	25	1.98
144542--145088	120	4.6	116	75	11	495	32	24	18	25	1.97
144542--145169	78	8.0	78	78	8	553	31	24	18	25	1.98
147155--147323	30	5.6	31	83	2	152	27	22	5	44	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147196--147344	30	5.0	29	83	5	140	31	21	4	42	1.71
147173--147344	60	2.8	60	78	6	152	31	22	4	42	1.72
149653--150020	181	2.0	181	93	0	619	44	10	23	22	1.83
154763--154897	43	3.1	43	87	2	191	35	22	14	27	1.93
154763--154951	86	2.3	82	81	10	224	34	23	13	28	1.92
154786--154934	43	3.6	41	83	7	153	30	26	14	28	1.95
159379--159425	14	3.1	15	82	17	53	38	0	4	57	1.18
159526--159629	41	2.5	41	85	3	147	20	21	21	37	1.94
159526--159674	41	3.7	41	80	4	131	20	20	20	38	1.94
159611--159708	40	2.4	40	89	1	142	20	22	20	36	1.95
161061--161150	46	2.0	46	84	0	117	20	14	27	37	1.91
166401--166434	17	2.0	17	94	0	59	41	14	17	26	1.88
170194--170563	195	1.9	193	83	3	483	28	21	24	25	1.99
173224--173256	7	4.7	7	88	11	50	33	0	12	54	1.37

Tables:   1

The End!