genome.fa.s12530.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012530.1 Kokia drynarioides strain JFW-HI SEQ_127537, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  532565

Tables:   1   2   

This is table  2  of  2  ( 159 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419311--419355	20	2.2	20	80	0	54	80	4	8	6	1.03
421423--421448	6	4.3	6	100	0	52	0	0	15	84	0.62
426700--426760	32	1.9	32	86	0	86	55	8	8	27	1.58
427681--427791	49	2.3	49	91	0	186	30	12	24	32	1.92
439738--440030	146	2.0	146	91	0	478	36	13	17	33	1.89
451717--452189	158	3.0	157	84	4	612	29	21	23	25	1.99
453486--453517	16	2.1	16	94	5	57	40	15	12	31	1.85
455929--456101	41	4.1	41	85	2	211	37	9	24	28	1.86
455968--456116	41	3.6	41	87	0	199	39	10	21	28	1.87
455968--456122	82	1.9	82	87	0	229	40	10	21	27	1.85
462865--462971	41	2.6	41	96	0	196	38	10	22	28	1.87
462997--463095	40	2.5	40	93	0	171	41	9	25	24	1.84
465316--465340	13	1.9	13	100	0	50	76	0	24	0	0.80
470784--470817	17	1.9	18	88	5	52	58	11	11	17	1.62
479984--480163	41	4.4	41	81	6	202	23	28	16	31	1.96
480090--480179	42	2.1	42	89	0	135	28	31	8	31	1.88
480090--480194	42	2.5	42	84	0	120	27	30	9	32	1.88
485917--485952	18	2.0	18	89	10	56	83	0	13	2	0.76
486752--486793	10	4.1	10	87	3	57	88	2	9	0	0.61
486752--486791	12	3.2	12	89	10	55	90	2	7	0	0.55
487732--487916	49	3.8	50	77	11	193	33	14	30	21	1.93
487706--487916	49	4.3	50	75	11	184	34	14	31	20	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
487981--488125	43	3.3	43	77	4	121	32	24	12	31	1.92
488144--488548	122	3.3	121	80	4	429	38	17	21	22	1.93
492811--492857	20	2.2	21	85	11	60	14	2	6	76	1.08
494225--494276	27	1.9	27	96	0	95	55	25	3	15	1.57
510480--510511	16	2.0	16	93	0	55	34	0	18	46	1.49
514256--514338	37	2.2	37	89	4	123	42	15	14	27	1.86
522465--522497	15	2.1	16	88	5	50	36	0	0	63	0.95
522942--522988	23	2.0	23	88	8	69	65	0	0	34	0.93
525696--525727	2	16.5	2	93	6	57	50	0	0	50	1.00
526028--526102	17	4.4	17	74	14	64	49	1	28	21	1.58
526046--526113	34	2.0	33	91	2	109	48	2	30	17	1.62
526049--526121	34	2.1	34	87	5	103	52	2	30	15	1.57
530986--531049	33	1.9	34	87	3	94	43	21	9	25	1.82
531516--531583	34	2.0	34	91	0	109	38	1	41	19	1.60
531516--531571	17	3.3	17	74	18	62	37	0	41	21	1.53
531647--531677	2	15.5	2	93	0	53	48	0	3	48	1.17
532529--532565	2	18.5	2	94	0	65	54	0	0	45	1.00

Tables:   1   2

The End!