genome.fa.s12662.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012662.1 Kokia drynarioides strain JFW-HI SEQ_127673, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  335207

Tables:   1   2   

This is table  1  of  2  ( 167 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4601--4632	12	2.4	14	90	10	50	59	0	21	18	1.38
35419--36001	290	2.0	288	89	1	898	31	16	8	43	1.79
40483--40723	4	58.2	4	72	8	151	28	1	5	64	1.24
45390--45429	21	1.9	21	84	0	53	27	17	17	37	1.92
46861--46894	18	1.9	17	88	5	50	41	2	5	50	1.42
47773--47834	20	3.0	20	84	11	65	54	1	1	41	1.19
47797--47836	21	2.0	19	90	9	62	52	2	0	45	1.14
50276--50333	19	3.0	19	77	5	62	56	3	0	39	1.16
50658--50694	19	1.9	19	88	0	56	27	0	8	64	1.21
50784--50895	58	1.9	58	81	3	136	25	8	14	50	1.71
51058--51143	41	2.1	41	84	4	111	55	10	5	27	1.56
60666--60737	35	2.1	35	100	0	144	40	16	19	23	1.91
61758--61789	2	16.0	2	100	0	64	50	0	0	50	1.00
62339--62386	16	2.9	17	78	6	53	33	6	0	60	1.22
62841--62912	32	2.2	33	82	7	85	27	4	16	51	1.63
63298--63336	19	2.1	19	85	9	53	53	2	0	43	1.14
71375--71433	15	4.0	15	68	10	50	25	6	11	55	1.60
71452--71521	23	3.0	23	76	2	68	38	14	17	30	1.89
73374--73425	19	2.9	17	89	10	86	30	1	17	50	1.57
73675--73741	29	2.3	29	92	2	109	40	8	16	34	1.80
76056--76090	3	11.7	3	100	0	70	65	0	0	34	0.93
76135--76208	17	4.3	17	85	1	94	37	2	5	54	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76284--76332	20	2.5	20	100	0	98	36	24	10	28	1.88
77403--77819	30	14.2	29	76	9	339	35	26	3	33	1.74
77403--77790	59	6.6	59	79	8	335	36	26	3	33	1.72
77445--77794	89	4.0	87	83	3	389	36	27	2	32	1.71
77403--77882	59	8.2	59	76	9	330	35	27	3	33	1.75
77403--77911	89	5.8	90	78	10	387	35	27	3	33	1.75
77684--77912	59	3.9	59	79	6	189	34	28	3	34	1.74
90019--90394	206	1.8	206	86	1	547	37	18	21	22	1.94
90716--90807	6	15.8	6	71	10	66	43	0	3	53	1.17
90701--90807	17	6.2	17	81	3	124	42	0	4	52	1.22
90734--90806	29	2.5	29	80	10	78	43	0	2	53	1.15
90716--90807	35	2.6	34	83	5	112	43	0	3	53	1.17
92573--92884	29	10.5	29	75	6	259	35	28	3	32	1.74
92573--92884	59	5.3	59	77	4	277	35	28	3	32	1.74
92846--93005	58	2.8	56	79	7	167	34	28	3	34	1.73
92938--93034	29	3.4	28	75	16	58	32	27	3	36	1.73
94166--94488	167	2.0	157	90	6	502	19	9	20	50	1.76
95813--95855	16	2.6	16	85	7	50	46	11	2	39	1.53
96640--96756	30	3.9	30	87	6	157	31	23	8	35	1.85
100808--100859	27	1.9	27	100	0	104	36	25	7	30	1.84
100803--100865	27	2.3	28	89	8	103	33	23	7	34	1.84
101395--101431	11	3.3	11	88	3	56	86	0	13	0	0.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101395--101431	6	6.5	6	84	9	51	86	0	13	0	0.57
101395--101431	16	2.2	16	85	4	56	86	0	13	0	0.57
102398--102458	22	2.8	20	87	9	68	72	0	24	3	1.00
102414--102458	22	2.1	22	95	4	83	75	0	24	0	0.80
103342--103589	98	2.5	97	82	3	266	37	15	25	21	1.93
103301--103590	49	5.9	48	73	10	178	37	15	25	21	1.93
103867--104500	45	14.2	45	81	6	632	30	24	17	27	1.97
104575--104666	48	1.9	48	88	0	139	39	14	21	25	1.91
104523--104781	124	2.1	124	88	0	383	39	16	21	22	1.92
104697--104920	85	2.6	85	85	0	304	37	18	20	22	1.94
111103--111265	30	5.5	30	80	11	151	37	23	3	34	1.73
111154--111262	57	1.9	58	84	5	150	38	25	0	34	1.63
111160--111262	29	3.6	27	79	11	100	37	26	0	34	1.63
113962--114000	21	1.9	20	84	5	51	43	5	30	20	1.73
114517--114614	49	2.0	49	100	0	196	30	14	30	24	1.94
115715--115772	13	4.2	14	77	18	59	79	0	18	1	0.82
115731--115785	8	6.4	9	81	6	53	80	0	20	0	0.72
115728--115786	12	4.8	12	82	12	66	79	0	20	0	0.73
115716--115786	26	2.9	23	76	15	70	77	0	21	1	0.85
115726--115786	26	2.5	24	84	7	77	80	0	19	0	0.72
115726--115785	28	2.1	28	85	11	79	81	0	18	0	0.69
115715--115787	13	5.8	12	75	12	58	76	0	21	1	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118339--118403	23	2.9	23	72	2	69	49	16	20	13	1.80
118403--118545	23	6.1	23	76	12	121	40	23	23	13	1.89
118402--118536	46	2.9	47	77	10	134	42	22	21	13	1.88
119785--119863	30	2.6	30	93	0	140	35	25	2	36	1.70
121419--121531	30	3.9	29	86	4	147	24	29	16	29	1.97
123142--123181	20	2.0	20	95	0	71	50	12	20	17	1.78
129184--129239	22	2.5	22	83	11	69	71	0	28	0	0.86
136752--136816	34	1.9	34	84	12	89	33	6	1	58	1.32
137574--137604	2	15.5	2	93	0	53	45	3	51	0	1.17
141257--141288	15	2.1	16	88	11	50	18	0	6	75	1.01
145328--145452	62	2.0	62	100	0	250	35	17	14	32	1.90
146809--146860	21	2.5	21	81	6	61	26	11	26	34	1.91
148499--148532	2	17.0	2	100	0	68	50	0	0	50	1.00
150957--151328	195	1.9	193	84	4	489	27	20	25	26	1.99
152081--152132	21	2.5	21	84	6	70	26	13	26	32	1.94
155071--155105	15	2.3	15	90	5	52	74	0	8	17	1.06
155882--156031	71	2.1	71	83	2	185	24	25	22	27	2.00
158713--158767	24	2.3	24	81	6	58	34	21	10	32	1.89
159441--159679	43	5.6	43	80	2	192	29	24	9	36	1.87
163538--163707	84	2.0	84	100	0	340	22	9	21	45	1.80
171011--171092	43	1.9	43	92	0	137	23	26	12	37	1.90
175087--175116	16	1.9	16	93	6	53	70	6	0	23	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
175084--175132	13	3.9	12	78	7	53	75	4	0	20	0.96
175084--175132	6	7.8	6	77	8	53	75	4	0	20	0.96
175084--175129	19	2.4	19	81	0	56	76	4	0	19	0.96
175080--175274	100	1.9	103	80	8	227	64	5	6	23	1.38
176141--176894	49	15.4	49	72	7	367	17	22	18	41	1.90
176118--176894	98	7.9	97	74	7	527	18	22	18	41	1.90
177922--177987	19	3.6	18	74	11	55	1	13	1	83	0.79
177922--177989	14	4.8	13	81	13	73	1	13	1	83	0.78
177940--177989	8	6.6	8	82	11	61	0	14	0	86	0.58
177922--177989	30	2.4	27	85	9	91	1	13	1	83	0.78
177994--178088	48	2.0	48	82	0	118	17	24	12	45	1.83
185980--186037	19	2.9	19	71	5	53	67	6	5	20	1.34
185979--186020	15	2.8	15	82	10	50	73	7	2	16	1.15
188746--188893	71	2.1	71	85	2	199	22	25	23	29	1.99
190066--190184	18	6.6	18	88	4	168	30	26	22	20	1.98
196687--196756	22	3.0	23	69	24	65	48	21	11	18	1.79
196687--196850	47	3.5	47	80	6	161	47	21	14	16	1.82
199557--199626	33	2.1	34	94	2	124	48	5	10	35	1.60
200839--200912	31	2.4	32	80	10	91	45	17	4	32	1.67
203486--203527	17	2.4	17	88	4	57	47	2	28	21	1.63
203500--203547	24	2.0	24	83	0	60	43	2	35	18	1.62
209055--209129	28	2.6	28	79	14	82	60	0	1	38	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209067--209126	7	8.4	7	80	10	59	58	0	1	40	1.08
209067--209126	15	4.2	15	72	16	56	58	0	1	40	1.08
209314--209356	20	2.3	18	84	8	50	65	2	2	30	1.18
209467--209501	16	2.1	17	89	5	54	42	2	0	54	1.15
209464--209516	10	5.6	10	75	20	51	35	3	0	60	1.15
222380--222425	23	2.0	23	83	4	58	41	6	4	47	1.49
226039--226123	36	2.4	36	86	4	118	41	24	23	10	1.86
229711--229754	19	2.2	20	84	11	56	65	0	27	6	1.17
230963--231057	27	3.4	28	82	4	77	32	18	12	35	1.89
230991--231057	27	2.5	27	85	0	89	32	17	14	34	1.91

Tables:   1   2