genome.fa.s12698.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012698.1 Kokia drynarioides strain JFW-HI SEQ_127709, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  135744

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2448--2498	26	2.0	26	88	7	77	37	23	13	25	1.92
2457--2561	25	4.1	26	80	1	106	36	26	12	24	1.91
2505--2659	25	6.0	27	76	11	128	35	23	17	23	1.95
2588--2672	27	3.2	27	85	3	93	32	23	21	22	1.98
2724--2762	21	2.0	21	85	10	55	53	5	0	41	1.23
7909--8003	30	3.2	30	73	0	91	32	26	15	25	1.96
7928--8009	15	5.5	15	69	16	62	30	24	18	26	1.98
7915--8042	60	2.1	60	84	5	161	28	25	18	26	1.98
7958--8036	15	5.3	15	74	8	63	26	22	22	27	1.99
23921--23974	21	2.6	21	85	5	65	22	20	20	37	1.95
26532--26589	24	2.4	24	83	13	75	55	3	0	41	1.17
34471--34511	21	1.9	22	95	5	75	31	24	14	29	1.95
34473--34524	21	2.5	20	84	12	61	34	28	13	23	1.92
47721--47774	19	2.8	19	77	0	63	25	1	5	66	1.23
48351--48398	24	2.0	24	91	0	78	47	8	16	27	1.75
72477--72531	21	2.4	23	85	8	69	43	27	9	20	1.81
72477--72532	24	2.5	21	82	8	58	42	26	8	21	1.82
73117--73323	43	4.9	43	82	6	206	29	25	10	34	1.90
73117--73318	85	2.4	86	81	4	221	29	25	10	34	1.90
77766--77852	28	3.0	28	80	6	86	67	1	2	28	1.10
88982--89057	31	2.5	29	71	14	73	23	3	14	57	1.54
92411--92467	24	2.4	24	96	0	105	26	22	24	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92460--92529	27	2.6	27	88	2	104	38	25	15	20	1.92
94846--94885	20	2.0	20	90	4	64	35	2	0	62	1.09
99751--99794	20	2.3	18	85	14	61	79	2	13	4	0.98
101404--101459	24	2.3	24	81	0	76	71	3	17	7	1.23
107942--108098	65	2.4	65	96	0	287	46	1	27	24	1.60
107982--108034	19	2.7	19	83	11	63	43	0	32	24	1.55
108047--108091	19	2.4	19	81	7	56	37	0	35	26	1.57
109007--115372	216	29.2	215	76	9	4942	28	16	14	40	1.88
109007--115372	647	9.7	645	74	11	4599	28	16	14	40	1.88
118505--127923	216	43.5	216	79	6	8811	28	16	13	40	1.87
118505--127923	649	14.5	647	81	4	9582	28	16	13	40	1.87
120909--121020	58	1.9	58	85	3	154	25	15	16	42	1.87
123772--127909	431	9.6	433	82	3	4579	28	16	14	40	1.87
127797--128058	149	1.8	148	82	8	351	27	14	13	45	1.81
127934--130210	216	10.6	216	82	4	2408	28	16	14	40	1.87
127934--130210	429	5.3	430	81	4	2488	28	16	14	40	1.87
129854--130575	361	2.0	363	83	4	922	28	17	14	39	1.89
131065--131164	39	2.6	38	84	4	137	27	4	17	52	1.62
133018--133054	19	2.0	18	89	5	56	72	5	13	8	1.24
133018--133054	18	2.0	19	85	15	51	72	5	13	8	1.24

Tables:   1

The End!