genome.fa.s12749.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012749.1 Kokia drynarioides strain JFW-HI SEQ_127760, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19252

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148--1250	216	5.1	214	81	3	1302	28	16	15	39	1.89
855--6057	432	12.7	392	70	14	1352	28	17	15	39	1.89
1247--2285	216	4.8	215	82	2	1154	28	17	15	39	1.89
428--5791	824	6.5	821	77	10	3440	28	17	15	39	1.90
2286--3323	216	4.8	214	81	4	1073	28	16	15	38	1.90
3327--4572	216	5.8	215	81	4	1359	28	17	15	39	1.89
4407--4740	176	1.9	176	85	4	460	26	18	15	38	1.91
4583--5393	215	3.8	215	79	5	865	27	17	15	39	1.89
5226--5561	176	1.9	175	81	7	412	28	18	14	38	1.90
5794--7254	216	6.8	215	79	4	1422	28	16	15	39	1.89
5794--8509	432	6.4	428	71	12	1818	27	17	15	39	1.89
5794--7254	648	2.3	647	81	3	1649	28	16	15	39	1.89
7087--7422	176	1.9	176	81	4	410	27	18	15	38	1.91
7263--8509	216	5.8	216	80	3	1321	27	17	15	39	1.90
8342--8677	176	1.9	176	80	6	394	29	17	12	41	1.86
8518--9338	216	3.8	216	81	5	885	28	17	14	39	1.88
8518--11183	433	6.3	430	76	10	1157	27	16	15	39	1.89
9195--9513	176	1.8	175	81	6	394	28	18	13	39	1.89
9339--17316	216	36.8	215	77	7	5724	27	16	15	39	1.90
9339--11245	433	4.4	432	87	2	2495	27	16	16	39	1.90
11815--12166	176	2.0	176	82	3	431	27	17	15	38	1.91
11991--17316	647	8.3	647	83	3	5894	27	17	15	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17150--17478	169	2.0	168	80	3	374	25	18	15	40	1.90
16935--17699	383	2.0	384	81	3	896	25	17	16	40	1.90
17319--19252	216	8.9	216	80	4	1994	27	16	15	40	1.89
17325--19252	660	3.0	642	85	3	2425	27	16	15	40	1.89

Tables:   1

The End!