genome.fa.s12777.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012777.1 Kokia drynarioides strain JFW-HI SEQ_127789, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  649601

Tables:   1   2   

This is table  1  of  2  ( 168 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11397--11492	48	2.0	48	100	0	192	29	20	12	37	1.90
17912--17950	9	4.3	9	83	0	51	0	17	0	82	0.68
17912--17950	18	2.2	18	90	9	62	0	17	0	82	0.68
17916--17954	20	2.0	20	94	0	69	0	17	0	82	0.68
17916--17970	23	2.6	21	83	13	60	1	16	1	80	0.90
17912--17971	18	3.6	16	78	17	61	1	18	1	78	0.92
26873--26902	14	2.2	14	94	5	53	36	10	23	30	1.87
43308--43384	30	2.6	30	85	0	109	27	24	20	27	1.99
48873--48912	18	2.2	18	86	0	53	42	25	15	17	1.88
52464--52528	33	2.0	33	96	0	121	30	24	24	20	1.98
55503--55556	17	3.1	17	86	2	63	18	12	11	57	1.64
63070--63115	11	4.1	11	78	15	58	36	2	2	58	1.22
64312--64350	20	2.0	20	85	10	53	48	0	7	43	1.31
72994--73023	7	4.3	7	91	0	51	43	30	0	26	1.55
79286--79514	111	2.1	111	96	0	422	32	19	19	27	1.96
80468--80506	21	1.9	21	89	5	62	25	17	15	41	1.89
82640--82704	15	4.5	14	76	16	62	26	1	1	70	1.04
82634--82704	29	2.4	30	81	13	85	26	1	1	70	1.04
82634--82705	14	4.9	15	77	11	69	26	1	1	70	1.03
84623--84707	38	2.2	38	85	0	107	24	16	28	30	1.96
90774--90807	17	1.9	18	94	5	61	14	20	11	52	1.73
93232--93263	16	1.9	17	93	6	57	46	0	3	50	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96695--96734	21	1.9	21	90	10	64	0	30	0	70	0.88
104563--104626	24	2.7	24	86	11	80	65	9	9	15	1.46
108509--108851	175	2.0	166	93	5	587	34	13	16	35	1.88
121403--121450	25	1.9	25	100	0	96	37	12	8	41	1.73
123116--123154	18	2.2	18	95	0	69	25	15	10	48	1.76
123168--123219	25	2.1	25	100	0	104	36	11	9	42	1.74
123501--123564	30	2.1	31	82	5	76	60	3	3	32	1.28
128126--128245	28	4.2	28	80	8	116	33	9	26	30	1.88
128145--128608	29	15.8	30	70	17	203	37	4	25	32	1.76
128167--128455	60	4.9	58	81	8	237	35	5	27	31	1.79
128146--128634	59	8.3	59	79	10	335	37	3	25	32	1.74
128399--128673	29	9.3	29	70	16	140	38	1	23	36	1.64
128174--128643	30	15.9	28	69	18	176	37	3	25	33	1.73
129734--129768	15	2.3	15	90	0	52	34	0	5	60	1.21
130464--130539	6	13.2	6	72	17	63	53	2	2	40	1.28
130479--130539	17	3.5	18	88	6	81	57	1	3	37	1.25
130951--131367	49	8.6	48	74	10	278	19	27	17	36	1.93
130952--131387	97	4.5	97	84	3	536	18	26	17	37	1.93
131014--131364	195	1.8	195	89	1	560	20	26	15	37	1.93
132879--132909	15	2.1	15	93	0	53	45	0	0	54	0.99
133614--133689	6	13.2	6	69	17	54	53	3	1	40	1.27
133629--133689	17	3.5	17	86	2	77	57	3	1	37	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
138321--138368	22	2.2	22	81	7	53	25	8	2	64	1.32
141731--141776	21	2.2	21	88	7	67	21	6	0	71	1.08
141740--141768	13	2.2	13	100	0	58	20	6	0	72	1.07
143380--143404	3	8.3	3	100	0	50	36	0	0	64	0.94
148173--148220	23	2.1	23	88	7	71	8	16	4	70	1.27
157745--157790	25	2.0	22	87	12	65	67	0	6	26	1.15
157746--157789	16	2.8	16	80	10	54	68	0	4	27	1.09
166144--166180	16	2.4	15	90	4	56	54	5	2	37	1.38
168308--168349	21	2.0	22	85	4	59	11	19	4	64	1.44
211542--211587	24	1.9	24	86	0	65	56	2	34	6	1.37
223020--223061	17	2.4	17	88	4	57	78	0	21	0	0.75
223019--223061	18	2.4	17	84	7	50	79	0	20	0	0.74
228563--228766	107	1.9	107	87	1	302	39	7	10	42	1.68
228702--229062	123	3.0	123	85	4	495	43	9	9	37	1.69
230372--230421	25	2.0	25	88	0	73	28	28	18	26	1.98
263016--263054	20	2.0	20	85	10	53	28	0	0	71	0.86
273211--273240	2	15.0	2	100	0	60	50	0	0	50	1.00
277430--277614	30	6.2	29	70	13	108	35	26	4	33	1.78
277430--277614	60	3.1	60	77	6	162	35	26	4	33	1.78
277677--277727	23	2.2	24	80	16	63	29	7	0	62	1.23
280809--280854	11	4.0	12	77	8	51	21	41	17	19	1.90
281740--281795	29	1.9	29	85	0	76	46	0	19	33	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281747--281803	29	1.9	29	85	3	78	47	1	17	33	1.58
282140--282287	30	5.0	29	85	8	122	38	20	4	36	1.72
285317--285359	18	2.5	17	88	7	61	67	0	2	30	1.03
285316--285354	9	4.3	9	81	12	53	69	0	2	28	1.02
312683--312972	144	2.0	144	94	0	508	36	15	10	37	1.82
316080--316130	24	2.1	24	88	0	75	54	9	11	23	1.66
320637--320699	33	1.9	33	87	6	92	26	20	15	36	1.93
347849--347894	16	2.9	16	93	3	76	80	0	19	0	0.71
347849--347896	10	4.5	10	82	10	51	81	0	18	0	0.70
350048--350096	23	2.1	24	84	3	64	28	18	6	46	1.72
355451--355551	36	2.8	35	83	8	132	39	15	22	21	1.92
357116--357197	40	2.0	40	97	0	155	36	17	1	45	1.56
363279--363343	26	2.5	26	74	0	76	27	12	13	46	1.79
371828--372049	113	2.0	113	93	0	381	40	21	15	22	1.90
372701--372726	11	2.4	11	100	0	52	50	7	7	34	1.60
375378--375422	24	2.0	23	86	8	65	22	0	31	46	1.52
397972--398014	17	2.5	17	80	0	50	23	25	18	32	1.97
398021--398090	33	2.1	33	83	0	86	28	20	21	30	1.98
398021--398101	16	4.9	16	76	7	74	27	18	22	32	1.97
401670--401725	18	3.2	17	82	5	58	75	1	1	21	0.99
401679--401717	17	2.2	18	86	4	53	71	2	2	23	1.10
402196--402240	22	2.0	22	95	0	81	15	4	20	60	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
402456--402500	22	2.0	22	95	0	81	15	4	20	60	1.52
403775--403805	9	3.4	9	95	0	53	38	22	0	38	1.54
404015--404473	161	2.9	160	86	1	618	32	14	17	35	1.90
407656--407907	63	4.3	54	81	8	200	27	50	1	19	1.55
407710--407906	63	3.1	63	88	0	286	27	50	1	20	1.55
408654--408697	21	2.1	21	95	0	79	54	13	2	29	1.51
408601--408753	77	2.0	78	97	1	290	49	12	4	33	1.61
409794--409898	32	3.4	30	77	11	106	50	24	0	23	1.55
410806--410876	32	2.2	32	80	7	83	30	4	1	63	1.22
416721--416745	10	2.5	10	100	0	50	64	0	0	36	0.94
429123--429308	93	2.0	93	98	0	363	39	11	14	34	1.83
434402--434469	33	2.1	33	100	0	136	2	26	5	64	1.30
456200--456247	19	2.6	18	81	15	53	66	4	0	29	1.10
456975--457425	224	2.0	224	99	0	893	43	18	11	26	1.84
457543--457587	14	3.2	14	87	0	63	31	22	24	22	1.99
463260--463291	3	11.3	3	87	12	50	68	0	0	31	0.90
464346--464401	21	2.7	21	83	2	69	33	28	21	16	1.95
474389--474430	9	4.6	9	80	13	50	69	0	0	30	0.89
476324--476362	20	2.0	20	89	0	60	23	12	15	48	1.79
479714--479765	15	3.4	15	80	20	54	25	1	1	71	1.07
497716--497804	24	3.7	24	80	1	97	26	17	26	28	1.98
508080--508142	24	2.6	24	84	0	81	50	9	11	28	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510212--510322	43	2.6	43	88	0	168	26	9	7	56	1.57
511565--511609	21	2.1	21	100	0	90	26	17	4	51	1.65
513389--513458	27	2.5	28	79	2	79	24	2	34	38	1.70
513488--513561	21	3.5	20	74	15	60	16	1	36	45	1.56
513875--513958	43	2.0	43	87	0	123	27	8	7	57	1.54
515759--515826	14	4.9	14	75	12	61	11	4	39	44	1.61
516149--516231	43	1.9	43	90	0	130	28	9	9	51	1.66
518401--518743	40	8.6	40	86	0	452	27	24	19	28	1.98
519412--519463	22	2.4	22	100	0	104	38	19	3	38	1.70
525111--525157	17	2.8	17	75	12	51	23	19	12	44	1.85

Tables:   1   2