genome.fa.s12777.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012777.1 Kokia drynarioides strain JFW-HI SEQ_127789, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  649601

Tables:   1   2   

This is table  2  of  2  ( 168 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
527867--527893	13	2.1	13	100	0	54	40	22	0	37	1.54
537864--537911	24	2.0	24	84	4	62	29	16	6	47	1.71
551991--552030	21	1.9	21	94	0	71	30	17	0	52	1.45
551993--552038	21	2.2	21	84	0	56	34	17	2	45	1.61
559306--559345	21	1.9	21	85	10	55	35	17	0	47	1.48
563724--563757	12	2.8	12	86	4	50	67	0	32	0	0.91
569044--569235	29	6.7	29	87	7	241	35	29	1	32	1.67
569044--569235	58	3.3	58	89	4	282	35	29	1	32	1.67
569048--569235	87	2.2	86	88	8	283	36	28	1	32	1.67
569048--569306	87	3.0	84	82	11	260	33	28	2	35	1.70
580314--580574	29	8.9	29	81	10	275	34	29	4	31	1.77
580310--580541	59	4.0	58	85	8	310	35	28	3	32	1.73
580643--580704	28	2.1	30	85	5	83	32	24	12	30	1.93
592498--593013	200	2.5	202	86	4	711	35	17	23	23	1.95
593420--593464	11	4.0	11	80	5	54	40	2	2	55	1.24
593421--593470	6	8.7	6	75	16	52	42	2	2	54	1.23
593421--593470	23	2.2	23	88	0	73	42	2	2	54	1.23
600961--601038	33	2.4	33	82	0	93	29	15	21	33	1.94
600978--601060	33	2.5	34	79	11	84	28	20	15	34	1.94
602106--602203	38	2.6	38	80	7	119	28	14	25	31	1.95
603184--603318	49	2.8	49	93	0	243	23	13	25	37	1.91
611135--611203	22	3.2	22	64	15	54	30	4	8	56	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
611115--611224	43	2.5	42	84	8	150	29	9	6	55	1.56
612071--612271	100	2.0	100	99	0	393	37	9	13	39	1.78
613100--613222	43	2.9	43	75	7	124	27	9	8	53	1.63
615757--615828	21	3.4	21	70	14	67	13	5	34	45	1.67
615746--615852	42	2.5	42	96	0	196	14	4	36	43	1.67
616184--616270	43	2.0	43	84	6	115	29	5	10	54	1.58
619192--619303	43	2.6	42	81	6	127	28	9	5	56	1.54
622093--622164	25	2.8	25	95	2	126	38	18	29	13	1.89
622149--622223	39	1.9	39	88	0	114	42	21	22	13	1.87
622188--622330	23	6.1	23	80	8	137	41	20	24	13	1.88
625934--625972	17	2.3	17	90	0	60	46	25	12	15	1.81
630670--630706	13	2.6	14	91	8	58	16	0	29	54	1.43
630719--630748	14	2.1	14	93	0	51	13	3	23	60	1.48
631050--631157	43	2.5	43	81	3	119	25	10	10	53	1.66
631341--631368	14	2.0	14	100	0	56	42	7	14	35	1.73
632743--632801	22	2.8	22	77	12	70	18	0	32	49	1.48
632806--632833	6	4.7	6	100	0	56	0	0	28	71	0.86
633400--633441	23	2.0	22	86	13	61	64	4	2	28	1.26
634572--634625	23	2.3	23	93	0	90	25	24	20	29	1.99
635501--635552	22	2.4	22	93	0	86	23	11	13	51	1.73
640614--640668	23	2.4	23	84	6	76	29	23	20	27	1.99
640895--641025	43	3.1	43	80	1	138	27	9	8	54	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
643864--643952	43	2.1	43	86	0	124	26	6	8	57	1.54
646773--646871	43	2.3	43	84	1	119	27	9	12	51	1.69
649139--649184	21	2.2	21	88	0	65	21	2	32	43	1.65
649497--649595	43	2.3	43	87	1	137	26	6	11	56	1.57

Tables:   1   2

The End!