genome.fa.s12808.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012808.1 Kokia drynarioides strain JFW-HI SEQ_127821, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  117875

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
901--948	19	2.4	20	82	10	62	2	33	0	64	1.05
901--948	10	4.8	10	82	7	62	2	33	0	64	1.05
22359--22419	28	2.2	28	84	0	77	27	13	19	39	1.89
26119--26157	17	2.3	17	86	0	51	20	17	12	48	1.80
28920--28976	30	1.9	30	85	7	80	28	28	19	24	1.98
28864--29010	75	2.0	75	90	0	231	31	24	17	26	1.97
38422--38461	18	2.3	18	91	4	64	72	0	27	0	0.85
38411--38461	18	2.6	21	81	12	63	70	0	29	0	0.87
38846--38888	17	2.5	17	81	11	52	18	13	6	60	1.55
39813--39866	24	2.3	24	96	3	101	29	11	7	51	1.64
41093--41146	24	2.3	23	84	12	74	29	12	3	53	1.56
42806--42832	11	2.5	11	100	0	54	33	7	0	59	1.25
49332--49373	21	2.0	22	85	4	59	64	2	21	11	1.38
52887--52918	16	1.9	17	93	6	57	65	18	12	3	1.38
55670--55720	15	3.4	15	73	10	50	31	25	19	23	1.98
75883--75924	19	2.2	19	100	0	84	30	33	4	30	1.78
77511--77560	21	2.4	21	100	0	100	18	26	18	38	1.93
78302--78591	52	5.6	52	84	1	323	33	22	15	28	1.95
78302--78601	104	2.9	104	79	3	361	33	23	15	28	1.95
84878--84931	21	2.6	21	82	11	74	35	16	9	38	1.81
85626--85920	52	5.7	52	81	4	319	31	24	16	27	1.96
91259--91283	8	3.1	8	100	0	50	40	0	36	24	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95718--95812	47	2.0	47	100	0	190	30	12	18	37	1.88
110598--110672	14	5.4	14	85	4	98	84	0	16	0	0.63
110575--110672	37	2.7	36	86	9	128	83	0	16	0	0.64
110580--110672	44	2.1	44	94	2	161	82	0	17	0	0.66
110575--110664	1	90.0	1	73	0	63	85	0	14	0	0.60
110575--110663	6	14.8	6	81	16	89	85	0	14	0	0.60
111496--111925	99	4.3	99	75	6	345	36	13	29	20	1.90
111496--111647	49	3.1	50	71	5	130	38	13	28	18	1.89
111793--111898	50	2.1	49	83	8	126	37	15	29	17	1.91
111491--111939	198	2.3	198	78	9	457	36	13	29	20	1.91
111829--111975	50	2.9	50	75	9	129	40	12	27	19	1.88
112258--113397	78	14.7	77	82	4	1221	31	24	17	26	1.97
112445--113418	38	24.8	42	70	14	329	32	23	17	26	1.97

Tables:   1

The End!