genome.fa.s12823.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012823.1 Kokia drynarioides strain JFW-HI SEQ_127836, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22622

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3047--3169	57	2.1	59	83	3	151	27	18	9	43	1.81
4171--4395	43	5.3	43	83	0	245	29	26	17	26	1.98
4669--4814	54	2.7	54	95	0	256	20	17	20	41	1.90
9694--9739	14	3.5	14	74	17	53	58	15	21	4	1.54
9692--9739	25	1.9	25	95	0	87	58	14	22	4	1.54
10575--10677	43	2.5	40	81	7	107	25	27	12	34	1.92
10536--10760	41	5.4	41	76	6	184	22	25	12	40	1.89
10620--10776	41	3.9	41	79	5	165	20	23	12	43	1.85
12208--12346	41	3.4	41	85	3	174	19	24	15	40	1.91
15256--15301	21	2.2	21	96	0	83	28	19	10	41	1.85
17571--17917	59	5.9	59	81	3	360	35	5	24	34	1.79
17571--17917	117	3.0	118	81	3	369	35	5	24	34	1.79
17567--17917	175	2.0	176	83	2	447	35	5	24	34	1.79
17691--17917	28	7.8	27	70	17	143	31	4	27	36	1.78
18936--18965	3	10.0	3	92	0	51	36	0	0	63	0.95
19670--19694	13	1.9	13	100	0	50	24	4	24	48	1.68
19706--19760	6	9.7	6	74	18	55	54	3	0	41	1.18
19699--19739	11	3.8	11	90	3	66	56	0	0	43	0.99
19699--19739	22	1.9	21	95	5	73	56	0	0	43	0.99
19712--19784	17	4.4	17	84	1	94	53	4	0	42	1.20
20305--20600	39	7.6	38	70	11	170	28	21	27	22	1.99
20261--20721	78	5.9	78	77	5	369	26	19	29	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20254--20709	156	2.9	153	81	4	466	26	19	28	25	1.99
20344--20760	39	10.7	39	69	10	199	25	19	29	25	1.98
20286--20760	156	3.0	155	79	4	413	26	19	29	25	1.98
20984--21467	49	9.9	49	74	8	367	19	24	17	39	1.92
20986--21467	147	3.3	146	75	8	447	18	24	17	39	1.92
20986--21419	98	4.4	98	88	1	582	18	23	17	39	1.92

Tables:   1

The End!