genome.fa.s12992.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01012992.1 Kokia drynarioides strain JFW-HI SEQ_128010, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  444825

Tables:   1   2   

This is table  1  of  2  ( 122 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9587--9644	21	2.8	21	100	0	116	48	10	10	31	1.71
42685--42714	3	10.0	3	92	0	51	63	0	3	33	1.11
54233--54357	12	10.8	12	70	12	57	68	18	5	8	1.35
54293--54350	12	5.1	11	85	4	62	67	18	6	6	1.37
54289--54391	35	3.0	35	78	7	111	69	18	4	6	1.29
54233--54357	23	5.4	23	71	14	62	68	18	5	8	1.35
54342--54414	22	3.3	22	75	16	69	71	16	5	6	1.27
54342--54413	21	3.3	21	73	17	65	70	16	5	6	1.28
54362--54415	23	2.3	24	87	9	76	74	16	5	3	1.16
58953--58991	18	2.2	18	90	0	60	46	10	5	38	1.60
59958--60006	24	2.0	24	88	4	71	38	0	2	59	1.09
65386--65410	12	2.1	12	100	0	50	32	8	28	32	1.86
70187--70699	117	4.4	116	83	4	557	27	20	15	37	1.92
70150--70699	56	9.3	61	73	9	410	28	20	15	36	1.93
70150--70718	61	9.6	58	72	9	348	28	19	14	36	1.92
71315--71368	24	2.2	24	80	0	63	27	38	22	11	1.88
71796--71856	30	2.0	30	87	6	88	26	6	4	62	1.40
71804--71894	30	3.1	30	85	4	105	26	6	3	63	1.34
71839--71909	29	2.4	29	81	9	90	26	8	1	63	1.31
72216--72468	59	4.3	58	75	6	217	35	17	18	27	1.94
72216--72480	58	4.5	59	75	10	229	35	17	18	29	1.93
72215--72471	116	2.2	120	87	4	362	35	17	19	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87285--87344	23	2.6	23	97	0	111	26	11	35	26	1.91
87511--87557	24	2.0	23	87	4	67	48	2	2	46	1.25
87524--87586	17	3.6	17	83	10	83	52	3	1	42	1.27
87521--87586	6	11.3	6	71	18	50	51	3	1	43	1.26
93828--93882	27	2.0	27	100	0	110	32	18	18	30	1.95
109232--109277	21	2.2	21	84	7	58	28	26	6	39	1.81
124375--124421	22	2.1	22	84	7	60	65	0	10	23	1.23
127014--127055	17	2.5	17	77	22	52	69	4	0	26	1.08
127016--127055	16	2.5	15	88	12	53	70	5	0	25	1.08
128846--128871	13	2.0	13	100	0	52	23	0	15	61	1.33
132590--132616	2	13.5	2	100	0	54	0	0	48	51	1.00
134128--134181	19	2.8	19	81	15	58	25	1	5	66	1.23
139164--139194	15	2.1	14	94	5	53	64	9	0	25	1.24
151268--151296	15	2.0	15	93	6	51	51	0	6	41	1.28
160744--160776	15	2.3	15	89	5	50	39	0	3	57	1.14
163584--163611	5	5.6	5	100	0	56	17	39	0	42	1.50
165780--165844	16	4.1	16	93	0	103	7	0	44	47	1.31
165776--165833	2	29.0	2	92	0	98	3	0	46	50	1.18
166011--166052	21	2.0	21	100	0	84	19	23	9	47	1.78
186801--186929	64	2.0	64	100	0	258	41	9	7	41	1.66
194571--194630	28	2.2	28	85	11	88	35	5	0	60	1.19
194726--194771	21	2.2	21	81	11	51	52	17	6	23	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
200082--200128	12	4.2	11	78	13	51	40	0	2	57	1.11
204193--204217	5	5.0	5	100	0	50	20	0	80	0	0.72
216472--216533	28	2.3	27	75	5	72	48	0	3	48	1.17
216566--216627	23	2.7	23	78	11	58	56	1	6	35	1.35
217889--217915	13	2.1	13	100	0	54	29	0	0	70	0.88
217867--217904	20	2.0	20	85	10	53	31	0	2	65	1.06
246830--246875	24	2.0	23	82	4	56	47	6	0	45	1.28
251450--251483	13	2.5	13	90	4	50	23	0	2	73	0.97
253178--253259	40	2.0	40	100	0	164	32	21	7	37	1.81
254249--254284	17	2.1	17	90	10	56	50	0	0	50	1.00
255484--255525	10	4.3	10	82	17	61	59	0	0	40	0.97
255538--255627	29	3.1	28	74	12	83	66	6	3	23	1.30
256542--256571	3	10.0	3	92	0	51	70	0	0	30	0.88
264816--264854	12	3.2	12	79	13	53	48	0	2	48	1.15
265384--265410	1	27.0	1	100	0	54	100	0	0	0	0.00
265464--265540	34	2.3	34	83	0	100	41	1	5	51	1.32
265464--265540	17	4.5	17	80	6	84	41	1	5	51	1.32
267275--267622	29	11.9	28	76	13	292	33	32	2	31	1.73
267275--267622	58	5.9	58	86	4	461	33	32	2	31	1.73
267279--267622	117	2.9	116	88	5	482	34	31	2	31	1.73
267283--267652	30	12.7	29	72	12	206	33	31	3	31	1.74
271695--271762	34	2.0	34	97	2	120	5	30	0	61	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273501--273560	26	2.4	25	82	2	66	36	3	3	56	1.32
275972--276006	13	2.8	13	91	4	54	28	2	0	68	1.04
294610--294659	25	2.0	25	92	0	82	52	4	6	38	1.45
305648--306114	59	7.9	60	74	7	398	28	19	15	36	1.92
305648--306114	119	3.9	118	79	7	419	28	19	15	36	1.92
306278--306366	31	2.9	31	94	0	151	28	11	20	40	1.86
306861--306951	30	3.0	30	91	0	137	60	4	7	27	1.43
308331--309139	59	13.6	59	69	15	345	38	16	17	28	1.91
308630--308927	119	2.5	119	77	14	283	38	14	18	28	1.90
308842--309086	61	4.0	61	70	14	186	43	16	15	24	1.87
309141--309307	60	2.8	60	76	11	171	35	13	19	31	1.91
309309--309377	30	2.3	30	92	0	111	39	18	8	33	1.82
309321--309386	30	2.2	30	100	0	132	27	15	9	48	1.74
311505--311556	19	2.7	19	79	5	52	42	0	1	55	1.10
313914--313938	11	2.3	11	100	0	50	28	8	8	56	1.57
318161--318249	35	2.5	35	79	3	88	46	5	1	47	1.33
320231--320288	29	2.0	30	89	3	91	18	39	1	39	1.61
322913--323010	31	3.2	31	73	12	94	37	4	1	57	1.25
325690--325733	21	2.2	20	83	4	52	36	6	13	43	1.71
327368--327466	38	2.5	40	74	11	96	33	28	15	23	1.95
328663--328993	167	2.0	166	96	1	619	33	20	8	37	1.82
330496--330546	27	1.9	26	84	11	68	33	0	1	64	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330496--330550	18	3.0	18	81	10	67	36	0	1	61	1.06
331088--331149	29	2.1	30	84	3	81	27	3	12	56	1.52
331299--331360	29	2.1	31	81	6	74	40	17	9	32	1.82
334250--334280	15	2.1	15	100	0	62	54	0	0	45	0.99
334255--334319	24	2.8	24	79	6	71	47	1	0	50	1.10
336972--336998	12	2.2	12	100	0	54	51	22	18	7	1.70
347489--347547	26	2.3	26	91	2	93	18	1	16	62	1.41
355191--355316	23	5.5	23	76	12	109	42	23	23	11	1.86
358709--358855	23	6.3	23	83	10	133	12	25	20	41	1.87
358709--358834	46	2.8	45	84	10	159	11	23	21	42	1.86
359678--359715	20	2.0	20	94	5	69	42	15	13	28	1.85
363588--363621	17	2.0	17	88	0	50	67	2	2	26	1.19
374137--376120	442	4.6	431	76	9	1422	36	19	16	27	1.93
377291--377363	13	5.4	13	69	25	53	34	1	2	61	1.19
377334--377394	31	1.9	33	90	6	99	37	1	3	57	1.25
377303--377406	31	3.3	31	75	12	97	34	1	2	60	1.23
380357--380648	144	2.0	142	94	2	476	28	7	19	44	1.78
383150--383278	23	5.5	22	78	11	109	41	22	24	11	1.87
388325--388382	29	2.0	29	93	0	98	39	17	22	20	1.92
388771--388890	61	2.0	61	86	1	170	31	12	11	44	1.78
399097--399177	31	2.7	29	84	9	92	33	7	12	46	1.69
399118--399177	29	2.0	29	87	9	86	31	8	11	48	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399603--399640	20	1.9	20	94	0	67	60	5	2	31	1.33
404572--404619	24	1.9	26	87	8	73	64	6	0	29	1.18
405251--405310	15	3.9	15	69	16	50	51	5	0	43	1.23
406658--406716	30	2.0	30	96	0	109	16	6	35	40	1.76
409901--410005	50	2.1	50	100	0	210	37	5	41	15	1.71
412931--413014	23	3.5	24	75	11	73	41	16	9	32	1.81
412966--413014	24	2.1	23	88	3	71	40	14	12	32	1.83
419147--419196	23	2.1	24	82	10	59	28	20	0	52	1.47
419182--419222	6	6.8	6	100	0	82	17	31	0	51	1.46
437201--437433	73	3.2	73	99	0	457	26	18	9	46	1.78

Tables:   1   2