genome.fa.s13023.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013023.1 Kokia drynarioides strain JFW-HI SEQ_128041, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46737

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--3881	215	18.4	211	76	8	3076	28	17	13	40	1.88
1798--16205	429	34.0	426	73	11	8433	28	16	13	40	1.87
3686--4071	189	2.0	193	82	7	462	28	17	15	39	1.90
3926--5261	215	6.2	215	79	5	1337	29	17	13	39	1.88
5262--12078	215	32.3	215	73	8	4624	28	16	13	40	1.87
6607--12073	625	8.6	624	75	8	4315	28	16	13	39	1.87
7037--7426	196	2.0	193	83	4	480	29	15	13	41	1.85
5262--16203	840	12.9	843	73	11	5738	28	16	13	39	1.87
11055--12078	214	4.8	214	80	5	986	28	17	13	40	1.88
11941--12233	154	1.9	154	82	6	371	30	19	11	38	1.88
12095--13019	214	4.3	215	81	7	1028	30	17	13	38	1.88
12522--13539	520	2.0	516	84	5	1327	30	17	12	39	1.87
13034--14776	215	8.1	215	81	4	1806	29	16	14	40	1.88
13034--16199	431	7.4	429	80	6	3205	29	16	14	40	1.88
13034--16199	860	3.7	856	82	5	3659	29	16	14	40	1.88
14583--14969	194	2.0	194	84	2	501	28	16	15	40	1.88
14770--16203	215	6.7	215	81	4	1550	29	16	14	39	1.88
16040--16377	172	2.0	172	89	0	514	30	15	15	38	1.88
16763--21166	215	20.7	214	76	9	3392	29	16	14	39	1.88
16763--21133	428	10.3	422	80	7	4361	29	16	14	39	1.88
24600--26321	215	8.1	214	81	5	1846	29	17	13	39	1.88
24600--26321	416	4.0	422	80	6	1653	29	17	13	39	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24600--26255	631	2.6	637	82	4	1975	29	17	13	39	1.88
27169--27270	29	3.4	29	77	8	107	36	1	21	40	1.65
27167--27283	30	3.9	30	77	6	116	37	2	20	39	1.66
28745--28782	17	2.2	18	90	4	60	44	0	0	55	0.99
28746--28797	26	2.0	25	82	10	61	42	0	0	57	0.98
28757--28833	32	2.2	36	82	17	101	40	0	2	57	1.13
30068--30104	19	1.9	19	88	0	56	43	21	5	29	1.75
31058--31133	32	2.4	32	88	4	109	50	19	2	27	1.61
37973--38035	18	3.6	18	95	2	110	17	12	0	69	1.18
37973--38035	12	5.3	12	96	1	110	17	12	0	69	1.18
37966--38057	6	14.8	6	87	7	69	22	8	0	68	1.17
37973--38056	12	6.8	12	86	9	89	21	9	0	69	1.17
40238--40411	41	4.2	41	86	4	217	24	27	8	39	1.84
41259--41306	22	2.2	21	81	3	60	37	12	0	50	1.41
44717--44745	12	2.3	13	94	5	51	68	0	0	31	0.89

Tables:   1

The End!