genome.fa.s13174.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013174.1 Kokia drynarioides strain JFW-HI SEQ_128193, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  308382

Tables:   1   2   

This is table  2  of  2  ( 156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
242947--243004	19	2.8	20	76	20	59	43	1	0	55	1.10
243982--244055	30	2.5	30	84	4	96	41	13	2	41	1.58
244044--244208	31	5.4	30	80	8	138	36	23	1	38	1.63
244044--244308	29	8.9	29	77	13	202	36	23	2	38	1.68
244073--244301	62	3.8	60	75	14	181	36	23	2	37	1.69
244092--244302	31	6.9	31	79	12	149	36	23	2	38	1.68
244215--244341	29	4.3	29	77	18	88	36	23	3	37	1.71
251605--251673	31	2.2	31	92	0	111	28	20	10	40	1.85
256586--257189	40	15.2	40	74	11	307	35	23	14	26	1.93
256601--257012	120	3.5	118	78	6	345	35	22	13	28	1.92
256555--257420	79	10.8	79	78	6	552	34	23	15	27	1.94
256555--257420	158	5.4	158	76	8	631	34	23	15	27	1.94
257930--258108	67	2.7	65	85	6	247	43	0	5	50	1.29
262584--262994	139	3.0	139	90	1	621	27	18	17	36	1.93
268292--268330	14	2.8	14	88	0	60	35	5	25	33	1.78
272110--272174	31	2.1	31	82	5	78	43	9	7	40	1.65
272886--272921	5	7.2	5	87	0	54	66	0	0	33	0.92
279275--279334	23	2.6	23	89	0	84	46	23	23	6	1.75
279282--279355	23	3.3	23	90	1	105	48	22	22	5	1.71
279776--279800	3	8.3	3	100	0	50	0	0	36	64	0.94
282022--282052	15	2.1	14	94	5	53	12	3	6	77	1.08
287943--288098	62	2.5	62	82	5	197	22	2	28	46	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290374--290422	26	2.0	25	84	8	64	22	10	18	48	1.77
291460--291513	28	1.9	28	100	0	108	46	11	7	35	1.67
293204--293330	64	2.0	64	96	0	236	45	9	22	22	1.81
295815--295840	3	8.7	3	100	0	52	65	0	34	0	0.93
298167--298333	67	2.4	69	73	16	166	62	2	4	31	1.27
298240--298279	19	2.1	19	85	0	53	60	2	5	32	1.32
298283--298329	10	4.8	10	75	15	53	72	2	2	23	1.06
298513--298645	9	13.7	9	66	13	50	33	4	1	60	1.26
298542--298586	19	2.4	19	85	7	56	24	8	0	66	1.20
298579--298616	20	1.9	20	94	0	67	47	0	0	52	1.00
298581--298626	20	2.3	20	85	7	58	45	2	0	52	1.13
299294--299457	85	1.9	85	84	10	219	38	6	15	40	1.72
307955--308035	23	3.4	23	86	3	99	44	22	20	12	1.85
307953--308056	23	4.4	23	80	7	93	44	21	23	11	1.84

Tables:   1   2

The End!