genome.fa.s13230.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013230.1 Kokia drynarioides strain JFW-HI SEQ_128249, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  345372

Tables:   1   2   

This is table  1  of  2  ( 197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3904--3950	19	2.5	19	78	0	58	40	6	2	51	1.39
4001--4050	20	2.5	20	75	21	50	46	8	2	44	1.44
7647--7713	30	2.2	31	86	5	100	25	16	8	49	1.74
7577--7764	89	2.1	89	80	4	200	25	17	10	46	1.79
8583--8614	7	4.6	7	100	0	64	59	25	0	15	1.36
8669--8739	6	11.2	6	81	14	81	18	0	35	46	1.49
12808--13014	26	8.0	25	79	5	166	33	23	17	25	1.96
12808--13014	52	4.0	52	80	5	217	33	23	17	25	1.96
12808--13014	78	2.7	78	79	5	240	33	23	17	25	1.96
15778--15804	8	3.4	8	100	0	54	22	11	0	66	1.22
21706--21832	64	2.0	64	92	0	209	35	13	22	28	1.92
30358--30387	14	2.1	14	93	6	51	76	0	6	16	0.99
30875--30905	7	4.4	7	100	0	62	45	16	25	12	1.83
36788--37016	104	2.2	104	79	1	226	37	15	18	28	1.92
38642--38699	17	3.4	17	76	9	64	50	15	6	27	1.70
43816--44020	108	1.9	105	81	6	243	37	12	3	46	1.61
44316--44346	8	3.8	8	91	8	53	61	0	38	0	0.96
44759--45136	30	12.9	30	74	11	223	35	22	2	39	1.69
44765--44942	61	2.9	61	85	0	232	34	21	2	42	1.65
44950--45133	29	6.4	29	76	8	153	37	25	2	34	1.70
44896--45114	57	3.8	58	82	6	216	34	23	3	38	1.71
44847--45152	114	2.6	113	75	8	285	35	24	2	37	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45273--45312	14	2.8	15	85	7	57	20	7	5	67	1.34
50584--50670	19	5.1	17	80	10	99	83	0	13	2	0.73
50591--50653	1	63.0	1	77	0	54	87	0	9	3	0.65
50584--50673	16	5.5	15	76	13	81	82	0	15	2	0.77
51603--51753	50	3.0	48	75	5	158	34	16	28	20	1.94
52171--52266	39	2.5	40	80	13	110	23	35	17	22	1.95
52220--52737	39	13.3	39	72	6	248	24	29	19	27	1.98
52175--52471	78	3.8	78	76	5	199	24	30	18	25	1.98
52220--52474	117	2.2	117	83	2	316	25	30	18	25	1.98
52446--52707	116	2.2	117	80	3	287	23	27	20	28	1.99
52604--52808	39	5.3	38	70	16	134	23	29	18	28	1.98
52570--52811	78	3.1	76	78	6	270	23	28	19	28	1.98
52331--52846	272	1.9	273	83	4	666	24	29	19	27	1.98
53841--54637	398	2.0	398	97	0	1515	41	21	11	25	1.86
55375--55399	11	2.3	11	100	0	50	36	0	0	64	0.94
55499--55705	30	6.9	30	76	7	172	36	18	2	41	1.66
55603--55905	30	10.4	29	78	10	203	36	23	1	38	1.64
55543--55869	30	11.1	30	79	10	246	38	23	1	36	1.63
55683--55897	58	3.7	58	84	6	258	37	25	0	36	1.63
56042--56086	14	3.0	15	83	9	56	22	8	4	64	1.40
57981--58049	20	3.3	20	74	18	61	55	5	0	39	1.24
59561--59671	31	3.7	31	70	16	97	28	12	9	48	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59880--60213	109	3.1	109	60	23	248	35	8	12	43	1.73
59660--60316	218	3.0	218	98	0	1271	37	8	13	41	1.73
65103--65393	145	2.0	145	97	0	546	30	12	16	40	1.86
67695--67733	16	2.4	17	83	12	55	79	5	2	12	1.00
75667--75957	145	2.0	145	97	0	546	30	12	16	40	1.86
78259--78297	16	2.4	17	83	12	55	79	5	2	12	1.00
81935--81971	17	2.1	18	90	5	58	18	5	27	48	1.70
88784--88822	16	2.4	17	87	12	64	79	5	5	10	1.04
90836--90860	11	2.3	11	100	0	50	64	12	0	24	1.27
92170--92224	24	2.5	22	80	13	67	12	1	38	47	1.52
95616--95662	25	2.0	25	87	8	71	38	4	4	53	1.40
100526--100578	21	2.5	20	79	11	61	24	16	9	49	1.76
108776--108817	2	21.5	2	90	4	68	47	0	2	50	1.14
108776--108825	12	4.1	13	92	5	61	46	0	4	50	1.20
109719--109757	15	2.7	14	80	7	51	30	0	5	64	1.15
110332--110365	13	2.4	15	90	9	54	73	0	0	26	0.83
111394--111555	55	2.8	55	80	10	166	52	12	12	22	1.72
111479--111555	29	2.6	28	78	13	75	55	10	11	22	1.65
114760--114804	12	3.8	12	84	0	54	37	0	60	2	1.09
114760--114805	14	3.4	14	79	11	60	39	0	58	2	1.10
115669--115716	22	2.2	22	92	0	78	37	18	2	41	1.63
118263--118292	15	2.1	15	93	6	53	30	16	0	53	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118300--118510	103	2.0	103	87	1	298	39	14	17	28	1.89
119961--120016	27	2.0	28	96	3	105	46	14	14	25	1.82
121425--121461	18	2.1	18	89	0	56	35	16	10	37	1.83
121839--121869	15	2.1	15	93	0	53	54	16	19	9	1.68
122175--122238	25	2.5	26	73	14	60	31	21	18	28	1.97
124108--124148	14	2.8	15	78	14	50	7	21	0	70	1.11
125165--125329	55	3.0	55	85	5	226	50	13	9	26	1.71
125566--125622	17	3.3	17	80	2	69	21	21	0	57	1.40
125566--125614	6	8.3	6	84	4	64	18	20	0	61	1.35
126429--126485	27	2.1	28	86	3	80	50	1	1	45	1.22
126622--126649	13	2.2	13	100	0	56	71	7	0	21	1.09
126852--126894	15	2.9	15	86	3	61	76	0	2	20	0.89
126854--126894	18	2.2	19	91	4	66	75	0	2	21	0.92
127256--127307	11	4.6	11	76	11	52	44	0	0	55	0.99
127274--127319	22	2.0	22	91	4	74	50	0	0	50	1.00
128545--128581	18	2.1	18	100	0	74	43	40	0	16	1.48
129697--129846	30	5.1	29	78	12	155	32	23	4	40	1.73
129697--129852	29	5.3	29	76	13	133	32	22	4	40	1.74
129706--129854	59	2.5	59	75	15	155	32	20	4	41	1.73
130872--130927	28	2.0	28	100	0	112	17	17	14	50	1.79
132210--132253	22	2.0	22	90	0	70	31	22	20	25	1.98
135137--135183	17	2.7	18	75	15	53	76	0	23	0	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135136--135180	23	1.9	23	86	4	63	77	0	22	0	0.76
136091--136314	99	2.3	98	82	3	261	33	13	31	20	1.92
136143--137059	147	6.2	147	75	6	572	34	15	30	20	1.93
136294--137143	99	8.6	99	74	6	456	34	15	30	20	1.93
136091--136712	246	2.5	246	85	2	820	32	14	31	20	1.93
136091--136849	246	3.1	246	82	2	702	34	15	30	20	1.93
136091--137068	345	2.8	341	79	6	929	34	15	30	20	1.93
136093--137087	50	20.2	49	71	9	287	34	15	30	20	1.93
136143--137160	49	20.7	48	72	6	303	34	15	29	20	1.93
136402--137160	147	5.1	145	74	8	412	34	15	29	19	1.93
137423--137592	84	2.0	84	84	5	218	38	16	20	24	1.92
137508--137601	48	2.0	48	83	8	120	42	17	19	21	1.89
137292--137790	208	2.4	207	87	2	687	38	17	21	22	1.93
137638--137793	85	1.8	85	90	0	249	37	14	25	22	1.93
137718--137838	48	2.5	48	89	0	179	37	14	24	23	1.92
137718--137853	48	2.8	48	85	2	130	38	14	23	22	1.91
137752--138127	166	2.2	166	83	5	452	39	15	21	23	1.92
152577--152681	38	2.7	38	83	1	138	36	20	16	27	1.93
153815--153864	20	2.5	20	81	15	50	46	2	12	40	1.52
164536--164573	2	19.0	2	100	0	76	50	0	0	50	1.00
172500--172543	17	2.5	18	88	3	63	59	4	0	36	1.18
173049--173094	22	2.1	22	84	8	58	36	0	2	60	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173043--173102	30	2.0	29	84	9	77	36	0	3	60	1.14
174086--174358	30	9.2	30	80	4	198	37	24	1	36	1.65
174159--174339	60	3.0	59	87	4	247	38	26	0	34	1.61
174165--174339	90	2.0	89	85	3	235	39	25	0	34	1.60
177453--177619	85	2.0	85	81	7	196	40	16	19	23	1.91
177230--177826	209	2.9	208	83	5	733	39	17	20	22	1.92
177663--177826	85	1.9	85	87	2	240	39	17	23	20	1.92
178221--178307	43	2.0	45	86	6	126	40	8	4	47	1.54
178226--178317	43	2.1	43	80	7	98	40	10	5	43	1.63
178764--178829	30	2.2	30	81	7	73	36	1	3	59	1.22

Tables:   1   2