genome.fa.s13230.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013230.1 Kokia drynarioides strain JFW-HI SEQ_128249, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  345372

Tables:   1   2   

This is table  2  of  2  ( 197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179420--179471	22	2.4	22	96	0	95	26	0	17	55	1.42
179800--180083	30	9.6	29	78	7	207	37	25	1	35	1.63
181679--181712	12	2.8	12	90	0	50	17	14	14	52	1.74
182134--182199	24	2.8	24	76	2	71	27	12	16	43	1.83
182265--182394	40	3.2	40	82	6	138	16	27	20	35	1.94
185234--185330	28	3.5	26	79	12	86	31	7	4	56	1.45
187847--187880	16	2.1	16	94	0	59	17	29	5	47	1.71
188695--188762	17	3.9	17	71	7	57	35	4	7	52	1.49
189836--189969	65	2.1	65	94	0	232	18	27	41	11	1.86
190546--190944	29	13.6	29	77	11	359	33	28	4	34	1.77
190546--190862	59	5.4	59	85	4	410	32	29	4	33	1.77
190546--190828	88	3.2	87	86	1	404	33	27	3	35	1.74
190546--190915	117	3.2	115	79	10	378	32	28	4	34	1.77
190602--190878	146	1.9	146	85	3	387	33	28	4	33	1.77
193952--194045	11	8.7	11	73	15	72	40	2	1	56	1.18
193933--194071	6	24.0	6	72	12	112	43	2	2	51	1.28
193968--194069	17	5.9	17	87	5	143	42	1	1	53	1.23
194718--194762	21	2.2	20	88	7	65	53	0	0	46	1.00
194712--194783	12	5.9	12	75	8	65	51	0	4	44	1.20
195863--196047	30	6.3	30	71	12	123	37	23	2	35	1.69
195851--196113	59	4.4	59	84	3	314	36	25	2	35	1.69
195851--196122	118	2.3	117	84	6	352	36	26	2	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195850--196146	29	10.1	28	75	7	236	36	26	2	35	1.68
196128--196190	29	2.2	29	86	8	85	33	30	9	26	1.88
200826--200905	39	2.1	39	88	2	117	56	11	17	15	1.67
201697--201759	15	4.2	14	78	9	54	77	1	17	3	0.97
201699--201755	16	3.2	16	77	18	51	80	1	14	3	0.92
201712--201753	21	2.0	21	85	4	57	78	2	16	2	0.96
203761--204219	250	1.8	249	86	2	670	33	22	21	22	1.97
204053--204432	194	2.0	194	87	2	548	34	18	23	22	1.96
204830--204922	6	16.0	6	73	10	86	44	2	2	51	1.25
204836--204920	17	4.9	17	84	7	109	42	2	2	52	1.27
205570--205614	21	2.2	20	88	7	65	53	0	0	46	1.00
205564--205635	12	5.9	12	79	8	74	52	0	2	44	1.15
206742--206954	29	7.3	29	73	6	155	37	22	2	38	1.69
206742--206954	59	3.6	57	79	10	234	37	22	2	38	1.69
210614--210646	12	2.8	12	95	0	57	69	9	9	12	1.36
210675--210764	44	2.0	44	95	0	162	35	7	23	33	1.84
213560--213596	3	12.7	3	94	5	67	70	0	0	29	0.88
215813--215870	30	2.0	29	86	3	80	41	0	5	53	1.23
218647--218690	15	3.0	15	81	15	56	52	0	9	38	1.33
219907--219945	9	4.1	10	80	12	55	28	2	0	69	1.02
219880--219980	26	3.8	26	75	12	71	38	0	0	59	1.11
219909--219977	9	7.7	9	75	8	52	33	1	1	63	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225635--225698	28	2.3	27	76	12	67	29	3	1	65	1.17
227765--227840	29	2.7	27	78	11	80	53	5	11	28	1.59
233012--233083	33	2.1	35	87	5	103	45	20	8	25	1.79
240090--240147	31	1.9	31	89	3	91	36	6	10	46	1.65
248320--248630	142	2.2	139	80	5	324	39	9	18	32	1.83
249666--250005	176	1.9	176	97	0	644	25	13	17	44	1.84
252726--252751	7	3.7	7	100	0	52	76	0	23	0	0.78
261393--261417	7	3.6	7	100	0	50	72	0	12	16	1.13
262993--263080	29	2.9	30	89	5	142	32	6	10	50	1.63
263364--263574	112	1.9	112	81	0	260	40	16	13	30	1.86
272432--272533	23	4.4	23	82	4	109	46	21	21	10	1.82
280464--280523	30	2.0	31	81	15	72	36	3	0	60	1.14
282658--282685	5	5.6	5	100	0	56	82	0	0	17	0.68
282827--282876	21	2.5	21	80	6	59	50	2	0	48	1.12
284729--284762	18	1.9	18	88	5	52	29	0	5	64	1.17
288577--288656	29	2.7	30	75	11	76	43	1	2	52	1.22
288781--288805	3	8.3	3	100	0	50	32	0	0	68	0.90
289588--289667	40	2.0	40	85	0	106	32	15	10	42	1.79
289731--289757	6	4.5	6	100	0	54	62	18	0	18	1.32
293195--293220	3	8.7	3	100	0	52	30	0	0	69	0.89
293952--293986	17	1.9	19	88	11	56	31	11	5	51	1.61
310039--310109	30	2.4	30	81	11	83	40	2	5	50	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311559--311613	14	3.7	14	72	13	56	41	1	1	54	1.21
311560--311623	31	2.1	31	93	0	110	40	3	3	53	1.33
315652--315685	3	11.3	3	100	0	68	67	0	0	32	0.91
317659--317789	65	2.0	65	100	0	262	32	26	10	30	1.90
322312--322368	11	5.2	11	84	0	78	61	0	29	8	1.26
322312--322368	22	2.6	22	91	0	96	61	0	29	8	1.26
326348--326426	31	2.5	32	77	2	79	41	1	5	51	1.31
326856--326900	22	2.0	22	82	0	54	57	2	2	37	1.23
336767--336800	11	3.2	11	91	4	52	17	32	8	41	1.80
336771--336803	11	3.0	11	95	0	57	18	30	9	42	1.81
339299--339368	33	2.0	36	86	8	101	42	15	20	21	1.88

Tables:   1   2

The End!