genome.fa.s13248.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013248.1 Kokia drynarioides strain JFW-HI SEQ_128268, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127113

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483--1120	59	10.9	59	87	3	842	33	31	3	31	1.76
3473--3522	20	2.5	20	81	15	50	42	14	0	44	1.44
8257--8306	20	2.5	20	81	15	50	42	14	0	44	1.44
13086--13122	18	2.1	18	89	0	56	45	24	8	21	1.78
19158--19194	19	1.9	19	89	10	58	59	2	37	0	1.12
19155--19194	17	2.2	17	86	8	53	60	2	37	0	1.11
25566--25625	21	2.9	21	84	0	75	33	26	15	25	1.95
28213--28357	37	3.9	37	82	6	132	35	31	18	14	1.91
28258--28431	37	4.7	37	85	0	213	37	30	18	13	1.90
29990--30039	20	2.5	20	81	15	50	42	14	0	44	1.44
34504--34530	3	9.0	3	100	0	54	66	0	0	33	0.92
35392--35465	26	2.7	27	77	10	80	41	5	9	43	1.60
35693--35759	24	2.8	24	90	0	98	29	20	28	20	1.98
35754--35834	24	3.4	24	87	0	126	39	12	27	20	1.89
41792--41855	32	2.0	32	90	6	103	68	3	3	25	1.18
42279--42307	13	2.2	13	100	0	58	41	0	0	58	0.98
42818--42865	19	2.6	18	78	15	62	22	0	6	70	1.09
42870--42912	21	2.0	21	91	8	70	39	0	0	60	0.97
44371--44401	15	2.1	15	100	0	62	19	12	29	38	1.89
44771--44810	12	3.3	12	89	0	62	50	0	42	7	1.30
44771--44810	2	20.0	2	84	0	53	50	0	42	7	1.30
55005--55053	22	2.2	21	80	16	55	30	36	10	22	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60398--60540	37	3.9	37	71	8	121	33	29	21	15	1.94
60391--60552	38	4.4	37	69	8	105	32	28	22	16	1.96
67296--67563	38	7.1	38	77	5	265	33	30	21	14	1.93
67296--67480	75	2.5	75	81	4	210	34	31	20	14	1.92
67285--67563	113	2.5	113	86	3	400	34	30	21	13	1.92
67285--67589	38	8.1	38	74	7	219	34	30	21	14	1.93
70066--70166	48	2.1	48	92	0	166	21	20	2	54	1.58
72980--73016	18	2.1	18	89	0	56	16	2	24	56	1.53
77963--77999	16	2.2	17	90	4	58	83	10	0	5	0.79
85057--85112	27	2.1	26	90	3	85	39	5	3	51	1.42
85576--85628	21	2.5	21	87	6	72	32	28	15	24	1.95
88981--89019	19	2.2	18	90	9	62	51	25	0	23	1.49
95032--95063	16	2.0	16	100	0	64	43	12	12	31	1.80
95035--95079	16	2.9	16	87	6	58	51	13	13	22	1.75
107963--108000	18	2.1	18	90	0	58	26	10	50	13	1.73
108989--109054	35	1.9	34	84	3	87	19	7	4	68	1.32
109032--109132	16	6.1	16	73	11	78	24	6	1	66	1.27
109013--109074	26	2.4	25	76	15	63	22	4	4	67	1.29
109045--109122	17	4.8	16	76	18	72	26	3	2	66	1.22
109048--109135	34	2.6	33	82	7	106	27	5	2	64	1.28
111930--111967	9	3.8	10	83	13	51	63	5	0	31	1.17
111993--112037	21	2.3	20	82	14	58	42	2	8	46	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114624--114712	42	2.1	42	81	4	99	31	22	24	21	1.98
121617--121670	22	2.4	22	81	3	54	72	5	9	12	1.27
124438--124479	13	3.4	12	81	12	50	61	2	0	35	1.09
125275--125331	12	4.9	11	76	17	53	49	0	5	45	1.24

Tables:   1

The End!