genome.fa.s13251.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013251.1 Kokia drynarioides strain JFW-HI SEQ_128271, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  539417

Tables:   1   2   

This is table  2  of  2  ( 221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280948--281130	98	1.9	98	88	0	276	37	18	25	18	1.93
280921--281130	49	4.3	49	78	2	206	37	18	24	20	1.94
281386--282256	114	7.6	114	87	0	1156	34	17	25	23	1.96
283402--283488	17	5.1	18	80	9	83	34	1	4	59	1.25
283397--283496	6	16.8	6	72	9	53	37	1	4	58	1.24
283417--283488	17	4.2	17	85	3	101	34	1	5	58	1.30
283418--283484	34	2.0	34	93	0	116	35	1	5	56	1.33
285221--285336	28	4.0	29	78	14	96	35	25	4	35	1.76
285272--285624	29	12.0	28	77	10	287	35	23	2	38	1.67
285283--285620	59	5.7	59	79	9	291	36	22	2	38	1.67
285702--285740	14	2.8	14	88	11	62	20	0	7	71	1.10
293710--293760	26	2.0	26	88	7	77	39	7	3	49	1.51
294752--294797	21	2.2	21	88	7	67	36	0	2	60	1.09
295156--295204	21	2.4	20	82	3	53	20	4	6	69	1.27
295135--295326	97	2.0	94	94	3	339	25	7	7	59	1.50
297621--297695	38	2.0	38	91	0	123	46	20	17	16	1.84
298662--298856	96	2.0	96	98	0	381	39	15	20	24	1.91
302366--302443	34	2.3	35	82	10	90	21	28	24	25	1.99
305814--305857	18	2.6	18	85	7	56	40	0	0	59	0.98
306145--306187	18	2.4	18	88	7	61	53	0	0	46	1.00
306362--306418	15	3.8	14	73	13	51	63	1	0	35	1.05
316610--316658	24	2.2	21	85	10	62	10	34	0	55	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
319094--319178	34	2.8	28	71	19	80	27	20	10	42	1.84
320488--320542	24	2.2	24	93	3	92	27	16	7	49	1.72
330279--330345	34	2.0	34	85	5	91	53	16	4	25	1.61
330299--330353	18	3.2	18	70	17	53	52	12	5	29	1.61
331140--331185	19	2.4	19	92	0	74	32	10	17	39	1.84
337022--337074	27	2.0	27	84	0	70	22	22	15	39	1.91
337390--337421	16	2.0	16	93	0	55	12	40	6	40	1.68
337335--337486	73	2.1	74	87	3	218	19	28	5	46	1.72
342794--342908	20	5.8	20	78	9	119	13	33	20	31	1.92
342792--342908	39	3.0	40	84	5	148	14	33	21	30	1.93
344882--344988	4	26.8	4	72	23	50	57	17	0	24	1.46
344882--344988	21	5.1	21	81	13	100	57	17	0	24	1.46
344875--344943	33	2.1	33	91	5	113	59	17	2	20	1.50
344879--344982	54	1.9	53	85	14	142	57	16	0	25	1.45
345097--345160	30	2.1	30	85	5	85	62	4	6	26	1.39
345765--345823	29	2.0	28	83	9	73	42	13	23	20	1.88
364044--364170	62	2.0	63	95	3	229	38	14	18	27	1.91
369392--369480	12	7.4	12	88	0	115	1	23	33	41	1.62
369407--369480	3	24.7	3	88	0	112	0	27	33	39	1.57
377877--377906	11	2.9	10	90	9	51	70	10	6	13	1.34
382382--382489	28	3.9	28	82	0	126	22	18	24	35	1.96
382382--382488	56	1.9	56	86	0	151	21	18	24	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382397--382518	56	2.2	56	82	5	140	24	17	23	34	1.96
382505--382567	27	2.3	27	100	0	126	23	15	26	33	1.95
386901--386946	17	2.8	17	78	15	60	0	23	0	76	0.79
395248--395306	21	2.8	21	76	5	66	32	25	15	27	1.95
395872--396383	254	2.0	254	97	0	961	28	20	16	34	1.94
401227--401263	12	2.8	14	80	16	51	21	0	21	56	1.42
401737--401834	28	3.5	28	75	10	110	22	19	21	36	1.95
401829--401957	27	4.7	27	73	17	74	26	15	22	35	1.94
401856--401918	27	2.3	27	86	10	85	20	17	23	38	1.93
404064--404123	26	2.3	26	88	0	93	38	10	16	35	1.82
410674--410746	26	3.0	24	64	7	65	19	26	16	38	1.92
410624--410855	54	4.4	52	88	3	283	23	25	14	36	1.93
410652--410854	104	1.9	106	86	6	286	24	24	13	37	1.91
410652--410854	54	3.8	54	88	4	290	24	24	13	37	1.91
410820--410884	24	2.7	24	90	0	103	16	35	20	27	1.94
410844--411310	50	9.1	50	82	6	504	22	24	16	37	1.94
410844--411310	104	4.6	100	84	6	508	22	24	16	37	1.94
410940--411066	24	5.0	25	62	7	69	20	22	16	40	1.91
410858--411304	154	2.9	154	86	3	589	22	24	16	36	1.94
411011--411090	24	3.2	24	66	13	72	20	27	16	36	1.93
446725--446798	35	2.1	35	97	0	139	29	16	27	27	1.97
454231--454325	1	95.0	1	70	0	55	1	11	2	84	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454231--454325	7	13.6	7	84	10	115	1	11	2	84	0.76
454232--454327	49	2.0	47	97	2	174	2	12	2	82	0.84
455840--455923	28	3.0	28	100	0	168	14	14	17	53	1.73
455840--455913	16	5.1	16	63	24	56	14	14	16	54	1.72
472318--472381	20	3.2	20	75	4	58	7	25	21	45	1.78
473204--473321	55	2.1	55	85	0	164	23	26	26	23	2.00
473693--474060	123	3.0	121	87	5	501	39	9	7	43	1.65
473988--474207	106	2.1	106	92	0	359	41	8	8	41	1.65
486544--486574	12	2.6	12	100	0	62	51	25	6	16	1.68
486845--487203	120	3.0	120	86	0	486	29	23	16	30	1.96
489545--489579	8	4.4	8	92	0	52	51	40	0	8	1.33
489547--489577	2	15.5	2	93	0	53	51	45	0	3	1.17
490157--490224	28	2.4	28	85	0	73	38	25	20	16	1.92
490184--490312	55	2.3	56	86	2	188	35	17	20	25	1.95
490184--490299	28	4.2	28	88	2	180	33	18	20	26	1.96
493569--494249	347	2.0	347	94	0	1193	37	20	9	32	1.85
501050--501138	46	1.9	46	95	0	160	29	12	8	49	1.71
506319--506481	28	5.8	28	77	1	130	34	20	18	25	1.96
508220--508261	19	2.2	19	95	0	75	42	11	21	23	1.86
509603--509681	29	2.7	27	78	16	79	50	2	0	46	1.14
509684--509740	23	2.4	24	85	5	71	50	5	3	40	1.42
509729--509777	20	2.5	20	82	0	62	46	0	4	48	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510292--510377	27	3.3	24	85	7	75	39	4	0	55	1.20
510290--510360	27	2.6	27	91	4	117	40	2	0	56	1.14
512387--512422	14	2.6	14	90	0	63	16	0	13	69	1.19
516154--516202	22	2.2	23	89	10	75	32	6	18	42	1.75
529138--529467	161	2.0	161	97	0	624	23	16	15	45	1.85
532666--532761	31	3.4	31	66	26	93	40	17	18	22	1.91
532657--532764	54	2.0	54	100	0	216	42	16	16	24	1.88
536146--536208	13	4.7	13	72	14	56	26	7	12	52	1.67
536136--536220	41	2.1	41	100	0	170	27	7	14	51	1.67
537249--537290	20	2.1	20	95	0	75	26	0	26	47	1.52
537322--537360	14	2.8	15	85	14	57	12	0	17	69	1.19
538000--538091	9	10.9	9	67	27	51	48	2	0	48	1.13
537995--538091	37	2.6	38	91	4	153	49	2	0	48	1.12

Tables:   1   2

The End!