genome.fa.s13273.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013273.1 Kokia drynarioides strain JFW-HI SEQ_128294, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  132303

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4830--5076	39	6.4	39	78	4	225	39	21	17	21	1.92
4829--5076	77	3.2	78	82	3	245	39	21	17	21	1.92
5021--5117	39	2.5	39	78	11	92	38	22	15	23	1.92
14048--14223	78	2.3	75	84	2	217	38	22	17	22	1.94
14051--14223	39	4.5	39	77	6	158	37	22	17	21	1.94
15751--15892	30	4.8	29	81	3	124	36	2	24	36	1.68
15713--15911	59	3.3	59	79	7	197	37	2	25	35	1.68
15747--15905	30	5.4	28	78	6	102	35	1	26	35	1.68
15915--16043	30	4.3	29	74	12	100	38	4	26	30	1.76
16601--16645	22	2.0	22	86	0	63	24	2	8	64	1.34
18050--18209	85	1.9	85	89	0	248	23	21	15	39	1.91
17928--18763	209	4.0	209	85	4	1075	24	20	15	39	1.92
18262--18426	85	1.9	85	90	0	258	25	23	13	37	1.92
18473--18632	85	1.9	85	84	7	218	25	22	14	37	1.92
17928--18746	413	2.0	415	86	3	1137	24	20	15	39	1.91
18548--18886	123	2.7	122	82	5	423	24	18	15	41	1.90
18472--19078	332	1.8	332	88	3	927	24	20	15	40	1.90
18796--18963	85	2.0	85	87	0	246	24	21	15	38	1.92
18995--19086	48	1.9	48	84	0	121	22	21	14	41	1.89
18675--19507	209	4.0	209	87	2	1093	23	19	16	39	1.92
19005--19171	85	2.0	85	86	0	235	22	23	16	37	1.94
19207--19381	48	3.9	48	70	19	142	22	20	16	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19214--19379	85	2.0	85	86	4	237	22	20	16	39	1.92
19089--19803	333	2.1	333	93	0	1214	22	19	17	39	1.92
19299--19631	124	2.7	123	91	2	499	23	20	17	39	1.92
19538--19630	48	1.9	48	86	0	132	23	21	16	38	1.92
19422--20011	209	2.8	209	88	2	871	23	20	16	39	1.92
19546--19708	85	1.9	85	89	0	254	23	22	14	39	1.91
19755--19922	85	2.0	85	86	0	237	23	21	15	39	1.92
20967--21131	42	3.8	43	81	6	172	18	24	11	46	1.82
23549--23628	40	2.0	40	95	0	142	23	17	15	43	1.86
34150--34186	18	2.1	18	89	0	56	48	0	27	24	1.51
36244--36438	82	2.4	82	91	0	300	32	25	18	24	1.97
41407--41463	23	2.4	21	76	21	51	21	5	17	56	1.60
45040--45150	57	1.9	57	94	0	195	55	9	18	16	1.67
45769--45841	17	4.2	18	70	25	50	36	2	1	58	1.21
46106--46143	19	2.0	19	89	0	58	31	10	21	36	1.87
47340--47417	28	2.8	28	76	3	77	41	7	7	43	1.62
67813--67864	16	3.4	15	76	10	52	7	11	1	78	1.02
72739--72801	24	2.6	24	79	0	72	49	9	12	28	1.72
75834--75877	20	2.1	21	87	4	63	72	4	0	22	1.02
79245--79279	18	1.9	18	88	0	52	68	2	0	28	1.04
83764--84061	30	10.0	30	76	9	277	33	3	22	40	1.69
83764--84061	119	2.5	118	81	9	327	33	3	22	40	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83767--84061	90	3.3	89	82	8	305	34	2	22	40	1.68
85051--85157	56	1.9	56	90	3	171	53	2	1	42	1.26
88975--89012	17	2.3	17	86	13	53	63	2	2	31	1.22
90207--90365	76	2.1	77	96	2	293	27	16	16	38	1.91
90322--90508	82	2.2	83	87	5	270	18	17	19	44	1.86
92181--92232	15	3.5	16	82	12	58	55	3	1	38	1.29
101941--102115	24	7.3	24	88	3	255	25	21	25	27	1.99
104482--104624	59	2.4	59	83	6	148	27	5	31	34	1.80
104531--104627	29	3.3	29	78	13	117	27	5	30	36	1.79
104513--104624	29	3.8	29	75	15	88	26	6	33	33	1.82
105629--105654	4	6.5	4	100	0	52	23	0	0	76	0.78
105638--105678	11	3.7	12	84	12	52	36	0	0	63	0.95
106460--106528	12	6.2	11	77	9	68	50	1	0	47	1.09
106463--106521	6	10.3	6	82	14	72	52	1	0	45	1.10
106463--106528	17	3.9	17	79	13	73	53	1	0	45	1.09
106758--107387	211	3.0	211	94	0	1071	20	22	20	37	1.94
111742--111790	25	1.9	26	91	4	82	26	8	30	34	1.86
118444--118784	59	5.8	59	91	1	540	29	4	32	33	1.77
119782--119814	16	2.2	16	89	10	52	39	0	0	60	0.97
119877--119934	30	1.9	30	100	0	116	29	10	17	43	1.82
120565--120622	6	10.2	6	85	10	86	50	0	0	50	1.00
120566--120639	11	6.6	11	81	9	87	54	1	0	44	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120565--120642	17	4.7	16	82	4	75	55	1	0	43	1.08
124857--125059	71	2.9	70	86	2	262	24	17	23	34	1.95
130822--130876	28	2.0	28	96	0	101	21	29	18	30	1.97

Tables:   1

The End!