genome.fa.s13414.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013414.1 Kokia drynarioides strain JFW-HI SEQ_128439, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  158383

Tables:   1   

This is table  1  of  1  ( 84 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--41	2	20.5	2	100	0	82	48	0	0	51	1.00
879--920	12	3.6	11	84	12	57	42	2	2	52	1.27
960--1004	23	2.0	22	83	12	56	17	0	13	68	1.20
12468--12645	50	3.6	50	80	1	205	35	18	22	23	1.95
14851--14895	23	2.0	22	83	12	56	17	0	13	68	1.20
21553--21603	20	2.5	22	75	18	56	25	5	1	66	1.24
21778--21825	23	2.0	23	84	4	60	27	0	6	66	1.15
24002--24062	16	3.8	16	82	8	79	47	3	22	26	1.67
24001--24071	32	2.2	32	82	0	88	45	5	22	26	1.75
24342--24392	24	2.1	24	82	10	59	56	0	5	37	1.23
28557--28589	16	2.0	17	88	5	50	57	27	3	12	1.49
34053--34188	62	2.2	62	92	1	220	53	2	1	42	1.22
34043--34143	21	4.9	21	67	9	64	51	0	1	45	1.19
34206--34268	32	2.1	29	88	8	90	46	0	1	52	1.10
34203--34264	15	4.0	15	74	15	63	43	0	1	54	1.09
34188--34283	30	3.3	28	74	11	88	39	0	2	58	1.10
34766--34833	3	22.7	3	100	0	136	67	0	0	32	0.91
39306--39339	12	2.8	12	83	16	52	52	20	0	26	1.46
39306--39340	11	3.0	11	88	12	52	54	20	0	25	1.45
43946--43984	20	2.0	20	89	0	60	38	2	5	53	1.37
45911--45955	19	2.4	19	81	7	56	37	0	4	57	1.19
52468--52515	10	4.8	10	80	10	62	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52467--52515	19	2.5	20	83	6	64	42	0	0	57	0.99
52467--52522	19	2.8	19	77	22	53	41	1	0	57	1.09
52467--52537	30	2.3	30	85	7	88	38	2	1	57	1.22
53592--53723	29	4.5	28	77	12	122	40	19	2	37	1.64
55277--55308	3	11.0	3	93	6	57	31	0	0	68	0.90
55278--55313	12	3.1	11	92	8	54	27	0	0	72	0.85
59864--59913	24	2.1	24	100	0	100	46	16	8	30	1.75
61092--61120	13	2.1	14	93	6	51	55	3	13	27	1.55
66873--67013	71	2.0	71	84	2	185	44	9	4	41	1.58
70134--70213	31	2.6	30	73	15	72	45	7	13	33	1.72
71642--71700	27	2.2	27	84	0	73	47	18	5	28	1.70
74488--74514	10	2.7	10	100	0	54	7	0	0	92	0.38
74868--75264	209	1.9	207	86	2	562	23	21	17	38	1.93
75200--75300	37	2.7	37	89	0	166	24	20	16	37	1.93
74991--75510	246	2.1	246	86	1	729	23	20	16	38	1.93
75247--75928	208	3.3	206	82	2	810	24	19	16	39	1.91
75600--75758	85	1.9	85	82	2	203	22	22	14	40	1.90
75864--75962	37	2.7	37	87	0	135	25	18	16	40	1.90
75448--76300	454	1.9	453	85	2	1192	24	20	15	40	1.91
76063--76222	48	3.6	45	75	17	156	26	21	13	38	1.91
74870--77242	662	3.6	658	84	4	2758	23	20	16	39	1.92
75653--76174	246	2.1	245	85	3	701	23	19	16	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76054--76222	85	2.0	85	89	2	259	26	20	14	39	1.91
75901--76590	207	3.3	208	85	2	931	23	21	16	39	1.92
76401--76751	161	2.2	160	85	7	489	23	21	16	37	1.94
76639--76834	85	2.3	85	88	0	275	25	24	14	35	1.94
76769--76871	37	2.8	37	87	0	143	25	24	15	34	1.94
76913--77079	85	2.0	85	85	2	228	25	20	14	38	1.91
76846--77241	208	1.9	209	87	2	582	24	19	16	39	1.92
77054--77358	162	1.9	160	88	4	461	23	20	15	40	1.91
77752--78079	46	7.4	46	83	5	363	27	18	20	33	1.96
77752--78077	85	3.7	89	83	7	387	27	18	20	33	1.96
85758--85873	48	2.4	48	82	2	144	25	25	11	38	1.88
86108--86231	62	2.0	62	98	0	239	21	20	18	38	1.93
86191--86357	85	2.0	85	83	2	210	24	22	14	38	1.91
85902--86436	270	2.0	270	87	2	781	22	20	17	39	1.92
86171--86728	208	2.7	208	89	0	839	22	21	17	39	1.92
86539--86889	161	2.2	159	88	3	517	22	22	17	37	1.94
96442--96483	11	3.8	11	78	12	50	28	2	2	66	1.16
99028--99092	32	2.0	32	96	0	121	35	3	32	29	1.73
112023--112086	31	2.1	31	87	0	92	39	28	6	26	1.80
114626--114687	24	2.6	24	78	0	70	27	12	11	48	1.76
116148--116200	15	3.4	16	76	7	65	35	15	35	13	1.86
116966--117201	50	4.8	50	78	5	237	16	30	17	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116917--117146	99	2.3	100	81	5	272	17	31	16	34	1.92
116966--117138	49	3.5	48	81	10	206	14	33	16	35	1.89
116965--117328	50	7.3	50	74	10	234	17	30	17	35	1.93
116965--117331	99	3.7	98	78	11	290	17	29	17	35	1.92
127429--127468	14	2.9	14	88	0	53	12	25	42	20	1.86
129068--129349	133	2.1	131	84	2	368	40	20	13	26	1.89
130260--130306	24	2.0	23	84	8	60	38	4	6	51	1.47
131821--131850	2	15.0	2	100	0	60	50	0	50	0	1.00
134285--134350	30	2.1	33	86	8	93	53	0	1	45	1.09
134641--134726	43	2.0	42	95	2	154	22	2	19	55	1.54
137950--138000	25	2.0	25	100	0	102	41	7	35	15	1.76
138162--138207	16	2.9	16	78	12	58	56	0	26	17	1.41
142693--142764	26	2.6	28	82	12	96	72	2	9	15	1.22
142693--142756	28	2.2	30	84	15	82	75	1	10	12	1.13
143614--143658	20	2.2	20	88	7	65	71	0	17	11	1.14
143756--143823	21	3.3	21	69	23	56	64	0	29	5	1.17
145289--145458	50	3.3	51	85	3	227	35	14	12	37	1.83
157539--157575	11	3.4	11	88	0	56	45	0	0	54	1.00

Tables:   1

The End!