genome.fa.s13530.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013530.1 Kokia drynarioides strain JFW-HI SEQ_128556, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  335120

Tables:   1   2   

This is table  2  of  2  ( 200 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
232765--233014	58	4.3	58	77	7	222	36	4	25	33	1.76
232775--233000	116	1.9	118	79	5	253	34	4	26	33	1.78
232964--233032	30	2.3	30	75	9	70	40	7	24	27	1.81
234267--234305	20	2.0	20	100	0	78	48	0	0	51	1.00
234294--234326	3	11.0	3	100	0	66	33	0	0	66	0.92
235035--235143	17	6.4	17	69	14	71	51	6	2	39	1.42
235065--235114	23	2.2	23	82	7	57	56	4	4	36	1.37
235286--235341	18	3.4	18	72	23	68	41	10	16	32	1.82
235277--235341	31	2.1	31	97	0	121	38	10	18	32	1.85
238124--238302	57	3.2	57	75	11	190	37	20	10	31	1.86
238121--238340	111	2.0	114	86	2	311	37	20	10	31	1.87
239040--239068	14	2.1	14	100	0	58	0	6	0	93	0.36
239044--239068	13	1.9	13	100	0	50	0	4	0	96	0.24
239530--239587	23	2.5	23	97	0	107	25	25	25	22	2.00
246147--246202	23	2.4	23	87	0	76	28	25	25	21	1.99
249872--249909	16	2.4	17	82	13	53	39	5	0	55	1.23
250080--250110	15	2.0	16	93	6	55	35	19	19	25	1.95
251014--251059	20	2.2	22	88	7	69	39	0	0	60	0.97
251229--251269	21	2.0	20	85	4	55	19	2	4	73	1.13
254460--254564	28	3.7	29	87	3	117	29	7	31	31	1.85
254466--254640	28	6.2	26	74	13	91	34	7	28	30	1.84
254494--254626	29	4.7	26	72	17	79	34	6	27	31	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254615--254757	29	4.9	29	75	10	103	38	4	22	34	1.74
254618--254796	30	6.1	29	77	10	141	37	3	22	36	1.71
254518--254786	87	3.1	87	77	7	235	36	4	25	33	1.77
254703--254840	30	4.7	29	77	16	92	34	2	25	38	1.68
254618--254796	29	6.1	29	73	9	89	37	3	22	36	1.71
256626--256738	18	6.5	17	85	6	145	55	2	1	39	1.24
256626--256738	35	3.2	33	84	9	136	55	2	1	39	1.24
256641--256727	6	14.7	6	76	11	81	56	2	1	40	1.19
256626--256738	53	2.2	52	90	1	172	55	2	1	39	1.24
257136--257724	210	2.8	209	83	3	698	22	21	18	37	1.94
257528--257600	37	1.9	38	88	2	112	21	23	17	36	1.94
258083--259059	49	20.0	49	73	7	535	19	29	15	34	1.93
258076--259043	196	5.0	195	80	4	963	19	29	16	34	1.93
258762--258859	46	2.1	48	82	3	119	17	28	17	36	1.92
259998--260074	23	3.3	24	81	10	81	1	19	1	77	0.90
260032--260074	10	4.4	10	85	2	52	0	20	0	79	0.74
259998--260093	31	3.2	29	78	14	88	4	16	1	78	0.97
260012--260069	20	2.8	21	84	10	75	1	18	0	79	0.82
259999--260081	20	4.0	20	80	16	73	2	18	1	78	0.93
259997--260095	11	9.3	10	75	11	65	4	17	1	77	0.97
260052--260090	20	2.0	19	85	5	51	7	10	0	82	0.86
260936--260968	17	1.9	17	88	11	50	0	27	0	72	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265391--265653	57	4.6	56	73	11	180	33	6	27	31	1.83
265391--265653	28	9.3	28	76	10	205	33	6	27	31	1.83
265391--265596	113	1.8	114	83	5	274	34	7	26	31	1.85
269645--269676	17	2.0	17	88	11	50	65	0	0	34	0.93
277886--278045	87	1.8	87	85	6	225	28	12	20	38	1.89
278513--278569	25	2.5	22	71	17	53	43	0	0	56	0.99
278507--278582	12	6.0	12	72	14	55	46	0	0	53	1.00
278593--278682	14	6.5	13	67	24	51	48	2	2	46	1.26
278597--278633	16	2.3	17	81	13	51	56	0	2	40	1.13
278646--278716	15	4.6	15	72	16	56	49	1	1	47	1.18
282037--282072	18	1.9	18	88	5	54	25	2	13	58	1.49
282049--282104	25	2.3	24	80	17	62	21	3	16	58	1.52
282106--282190	9	9.2	9	69	14	57	27	2	14	56	1.50
286114--286139	13	2.0	13	100	0	52	46	23	7	23	1.78
286756--286809	15	3.6	14	78	11	54	57	0	5	37	1.22
287866--288085	30	7.5	29	81	6	221	35	28	2	34	1.72
287864--288027	58	2.8	58	86	6	222	35	27	2	34	1.70
287866--288085	88	2.5	86	88	2	296	35	28	2	34	1.72
287866--288085	58	3.8	59	80	7	200	35	28	2	34	1.72
288189--288245	27	2.1	27	83	0	69	29	29	8	31	1.87
295957--295989	2	16.5	2	100	0	66	51	0	0	48	1.00
303620--303673	25	2.1	26	86	10	76	5	3	16	74	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
303620--303673	22	2.3	24	81	9	58	5	3	16	74	1.16
303678--303791	12	9.8	12	77	8	94	8	6	16	68	1.36
303702--303785	44	1.9	44	90	0	132	8	5	15	70	1.32
303688--303805	56	2.1	56	82	6	141	9	5	16	68	1.34
303922--304009	39	2.3	38	79	13	90	23	0	9	67	1.19
316363--316425	20	3.2	20	86	0	81	30	28	11	30	1.91
318302--318327	5	5.2	5	100	0	52	80	0	19	0	0.71
321486--321514	6	4.8	6	100	0	58	13	34	0	51	1.42
321486--321523	18	2.1	18	90	0	58	13	39	0	47	1.42
322672--322700	14	2.0	15	93	6	51	31	0	6	62	1.22
331366--331451	27	3.2	28	66	20	76	60	13	3	22	1.49
331340--331451	52	2.2	51	90	4	181	61	12	4	21	1.48
331362--331448	24	3.5	24	69	17	68	60	13	3	21	1.48
331731--331768	3	12.7	3	88	0	58	5	0	60	34	1.19

Tables:   1   2

The End!