genome.fa.s13611.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013611.1 Kokia drynarioides strain JFW-HI SEQ_128638, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  263036

Tables:   1   2   

This is table  2  of  2  ( 147 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238225--238267	21	2.0	22	86	4	61	25	2	0	72	0.97
238245--238293	9	5.8	8	86	13	55	30	0	0	69	0.89
238946--238970	4	6.2	4	100	0	50	52	24	0	24	1.48
239258--239303	17	2.6	18	82	3	58	47	19	8	23	1.77
250699--250749	17	2.9	17	82	2	57	52	1	1	43	1.23
252659--252891	31	7.9	28	70	14	112	36	27	3	33	1.72
252693--252804	31	3.7	31	81	11	151	36	23	2	37	1.69
252651--252926	59	4.7	58	80	8	236	35	26	3	34	1.74
252651--252892	29	8.2	29	70	15	131	36	26	3	34	1.73
252727--252975	59	4.2	60	70	17	152	35	25	2	35	1.71
252965--253026	28	2.2	28	83	11	74	32	32	11	24	1.90
258513--258542	15	2.0	15	93	0	51	76	0	23	0	0.78
259725--260199	100	4.7	98	75	10	417	41	19	25	13	1.88
259720--260199	50	9.6	48	71	11	293	41	19	25	13	1.88
259720--260199	150	3.2	150	92	0	834	41	19	25	13	1.88
260292--260639	50	7.0	50	73	9	273	41	19	25	12	1.87
260250--260639	150	2.6	150	91	0	611	41	19	25	13	1.88
260250--260695	100	4.5	98	74	11	280	40	19	26	14	1.89
260250--260689	150	2.9	149	86	4	573	40	19	26	14	1.89
260783--260950	51	3.3	50	72	9	169	33	16	17	32	1.92
260768--260969	101	2.0	101	93	0	341	35	15	18	30	1.93
261036--261125	39	2.3	39	82	0	108	22	32	17	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261193--261740	194	2.8	194	92	0	920	37	17	22	22	1.94
261576--261909	169	2.0	162	83	7	413	36	17	22	23	1.95
262352--262418	6	11.3	6	75	9	66	41	2	1	53	1.25
262352--262418	17	3.8	17	88	4	89	41	2	1	53	1.25
262355--262427	17	4.2	17	77	10	67	45	2	2	49	1.31

Tables:   1   2

The End!