genome.fa.s13640.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013640.1 Kokia drynarioides strain JFW-HI SEQ_128668, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94591

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3481--3546	32	2.1	32	91	0	105	30	13	12	43	1.80
6497--6533	3	13.0	3	88	11	60	70	0	29	0	0.88
8389--8896	99	5.2	98	82	4	526	33	14	32	19	1.92
8389--8896	100	5.2	99	82	3	537	33	14	32	19	1.92
8377--8891	50	10.5	49	71	12	256	33	15	31	19	1.92
8903--9884	38	25.4	39	70	11	432	33	22	17	26	1.96
8903--9731	157	5.3	154	79	7	784	32	23	17	26	1.96
8903--9731	78	10.7	79	77	6	580	32	23	17	26	1.96
8946--9689	156	4.8	155	79	8	674	32	22	17	26	1.96
9762--9908	77	1.9	77	84	0	195	36	19	16	28	1.93
15436--15477	3	14.0	3	100	0	84	66	0	0	33	0.92
15535--15612	36	2.2	36	82	13	90	50	2	0	47	1.15
17230--17422	101	1.9	101	82	6	239	23	18	30	27	1.98
17677--17865	40	4.7	40	81	1	191	33	20	17	28	1.95
17679--17865	80	2.3	80	82	1	223	33	20	17	28	1.95
23332--23462	59	2.2	59	83	2	156	39	25	12	22	1.89
23380--23476	30	3.3	30	77	4	92	42	26	13	17	1.86
23317--23476	30	5.4	29	70	7	90	41	26	13	18	1.88
28887--29101	110	2.0	111	83	3	274	40	14	12	32	1.84
29301--29339	19	2.2	18	90	9	62	64	0	5	30	1.15
29741--29783	19	2.3	18	80	4	50	76	4	4	13	1.10
30382--30416	2	17.5	2	100	0	70	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32291--32362	26	2.7	28	77	12	80	31	0	2	65	1.07
32314--32361	9	5.5	8	79	16	51	31	0	2	66	1.03
32617--32712	28	3.4	28	100	0	192	41	9	3	45	1.52
34262--34296	17	1.9	19	88	11	56	71	0	5	22	1.07
34598--34643	19	2.3	20	82	14	60	39	0	2	58	1.10
37351--37393	21	2.2	19	88	12	61	41	16	11	30	1.83
37387--37569	70	2.6	70	93	0	321	48	8	14	28	1.74
41303--41592	52	5.6	52	84	4	347	37	22	12	26	1.91
46014--46127	56	2.0	56	91	0	183	25	20	35	19	1.96
50066--50100	18	1.9	18	88	0	52	25	0	5	68	1.11
54184--54278	47	2.0	47	85	4	129	40	9	23	27	1.85
54544--54583	16	2.6	15	84	7	62	57	35	0	7	1.27
55951--55985	13	2.6	14	86	13	56	25	11	0	62	1.28
59288--59335	18	2.6	19	77	12	55	25	20	27	27	1.99
59781--59820	20	2.0	20	95	0	71	25	7	10	57	1.57
59945--59998	21	2.6	21	87	0	81	24	12	27	35	1.92
66871--67290	209	2.0	208	90	1	662	33	14	22	29	1.94
69526--69579	28	2.0	26	82	7	63	16	11	20	51	1.74
70264--70399	51	2.7	50	73	7	123	31	13	23	30	1.94
70411--70569	51	3.2	50	71	20	143	35	18	16	29	1.93
71897--71949	13	4.3	12	77	18	56	24	3	0	71	1.02
72072--72145	10	7.2	10	76	13	55	21	0	4	74	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79401--79444	14	3.5	14	71	28	53	27	4	0	68	1.09
79393--79445	23	2.3	23	100	0	106	24	3	0	71	1.02
88968--89011	23	2.0	22	86	4	61	38	0	15	45	1.47
92467--92711	53	4.6	53	88	1	357	28	16	20	34	1.95
92467--92711	105	2.3	106	88	3	352	28	16	20	34	1.95

Tables:   1

The End!