genome.fa.s13665.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013665.1 Kokia drynarioides strain JFW-HI SEQ_128693, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  84150

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1786--1819	5	6.8	5	96	0	50	67	0	32	0	0.91
4958--5042	23	3.7	23	71	4	64	32	10	12	43	1.77
6922--6992	30	2.4	29	76	19	74	40	4	8	46	1.54
10182--10238	23	2.5	23	85	5	80	77	0	14	8	0.99
10182--10238	15	3.7	15	73	13	53	77	0	14	8	0.99
11720--11762	19	2.2	21	84	12	56	55	9	0	34	1.32
11731--11767	19	2.0	19	89	5	58	56	8	0	35	1.29
13635--13690	24	2.3	24	87	0	76	50	8	14	26	1.72
14286--14333	22	2.2	21	77	3	51	50	0	14	35	1.44
15132--15403	41	6.5	41	80	5	240	37	10	24	27	1.88
15132--15403	86	3.2	81	77	6	256	37	10	24	27	1.88
35158--35200	14	3.0	14	83	6	50	39	30	2	27	1.69
35278--35332	7	7.9	7	80	8	58	30	3	25	40	1.73
35280--35343	21	3.0	21	82	13	78	32	4	23	39	1.75
35279--35337	28	2.1	28	87	0	82	30	3	25	40	1.72
35820--35846	13	2.1	13	100	0	54	0	37	0	62	0.95
43789--43929	57	2.5	57	83	7	157	23	4	32	39	1.76
46417--46465	24	2.0	24	92	7	82	55	6	10	28	1.57
49721--49771	27	1.9	27	84	11	70	27	5	0	66	1.14
56068--56093	3	8.7	3	100	0	52	30	0	34	34	1.58
57513--57549	18	2.1	18	89	0	56	56	13	8	21	1.63
58707--58748	18	2.3	19	84	12	52	38	0	2	59	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64397--64428	13	2.5	13	89	0	55	34	21	15	28	1.94
72950--73001	18	3.0	18	81	10	56	51	0	1	46	1.12
79844--79878	17	2.1	17	94	0	61	42	25	14	17	1.86
83372--83448	39	2.0	39	100	0	154	44	7	5	42	1.55

Tables:   1

The End!