genome.fa.s13859.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013859.1 Kokia drynarioides strain JFW-HI SEQ_128887, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  257970

Tables:   1   2   

This is table  1  of  2  ( 170 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4462--4521	18	3.4	17	75	9	57	51	15	11	21	1.74
4462--4535	36	2.1	35	82	12	89	48	16	9	25	1.76
4545--4654	52	2.1	51	83	5	132	44	14	10	30	1.79
5314--5384	18	3.9	18	75	0	61	43	19	5	30	1.74
5615--5678	31	2.1	31	82	11	78	53	18	3	25	1.59
7766--7920	17	9.1	17	80	4	141	32	16	14	36	1.90
7769--7920	34	4.4	34	80	1	169	32	17	14	35	1.90
7787--7921	69	2.0	69	87	0	198	34	17	13	34	1.89
13625--13789	30	5.6	29	74	16	137	39	4	23	32	1.76
13627--13846	30	7.5	29	69	19	127	39	3	25	32	1.73
13591--13865	59	4.7	59	84	7	321	38	4	25	31	1.77
13627--13851	29	7.6	28	75	12	159	39	3	25	31	1.73
13652--13876	29	7.7	29	72	11	172	37	3	26	32	1.72
15012--15102	12	7.3	12	69	19	62	31	5	1	61	1.26
15816--15878	17	3.6	18	87	8	85	53	6	1	38	1.36
16306--16918	98	6.3	98	74	10	472	17	25	18	38	1.92
16413--16919	147	3.5	146	85	5	622	17	25	18	39	1.92
16320--16918	49	12.3	49	73	12	427	17	25	18	39	1.91
28582--28849	30	9.0	30	67	18	123	37	4	26	31	1.77
28590--28840	59	4.2	59	80	9	228	39	4	24	31	1.75
29961--30055	12	7.7	12	71	15	68	34	7	1	56	1.34
30800--30846	6	8.0	6	77	13	53	53	4	0	42	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30802--30846	17	2.6	17	92	3	72	55	4	0	40	1.20
32213--32258	25	1.9	25	86	8	69	32	4	6	56	1.45
37898--39504	321	5.0	321	93	3	2654	36	9	8	45	1.66
38953--39000	22	2.2	22	81	7	53	64	6	6	22	1.39
37898--39504	640	2.5	645	94	2	2841	36	9	8	45	1.66
40839--41007	28	5.9	29	72	10	132	32	10	26	31	1.89
40843--41014	86	2.0	85	85	5	231	33	10	25	30	1.90
40854--41033	29	6.3	28	74	13	102	34	10	22	32	1.88
40991--41118	57	2.2	58	83	6	154	39	3	21	35	1.70
40991--41246	58	4.4	57	78	10	209	35	2	24	37	1.69
41026--41245	87	2.5	87	79	9	218	33	1	25	40	1.64
40991--41256	29	9.1	29	75	10	179	35	2	24	37	1.69
42269--42315	16	3.0	16	80	20	55	31	0	2	65	1.04
42989--43093	17	6.3	17	78	8	108	59	2	0	37	1.19
42997--43065	11	6.7	11	69	21	51	57	2	1	37	1.22
42989--43081	32	2.8	33	83	6	125	56	3	1	38	1.22
43539--43862	173	1.9	173	87	3	474	21	21	18	37	1.94
44100--44401	78	3.9	78	79	1	311	27	21	28	22	1.99
44230--44479	117	2.1	116	85	5	333	27	21	29	22	1.99
44336--44795	78	5.9	78	78	4	394	26	20	28	24	1.99
44263--44495	117	2.0	117	90	1	369	25	21	29	23	1.99
44115--44789	39	17.4	39	68	11	194	26	20	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44316--44596	117	2.4	117	81	5	293	27	19	28	24	1.98
46129--46180	24	2.2	24	86	3	70	5	19	0	75	1.01
46149--46221	17	4.3	17	82	5	85	2	16	0	80	0.82
46158--46222	10	6.1	10	76	13	58	3	16	0	80	0.85
46147--46221	34	2.2	34	88	4	107	2	16	0	81	0.80
46147--46222	27	2.7	27	84	10	91	2	17	0	80	0.83
51184--51403	87	2.5	87	85	0	280	31	8	27	32	1.86
51212--51614	29	13.9	29	68	17	164	34	4	24	36	1.75
51390--51584	57	3.4	57	79	8	155	37	2	21	39	1.65
51417--51615	29	6.8	30	77	11	171	36	1	22	40	1.61
51417--51647	30	7.8	30	76	10	156	36	1	22	40	1.62
53329--53384	23	2.4	23	90	0	85	57	5	1	35	1.32
53352--53385	17	2.0	17	88	0	50	61	2	0	35	1.11
57912--58138	41	5.5	41	85	6	253	39	11	24	25	1.88
57912--58138	82	2.7	82	82	4	287	39	11	24	25	1.88
60793--60960	41	4.1	41	89	3	230	38	10	25	25	1.87
60793--60960	82	2.0	82	90	0	264	38	10	25	25	1.87
62253--62485	41	5.7	41	72	8	150	28	22	27	21	1.99
62330--62488	41	3.9	41	77	0	165	28	23	29	18	1.98
64105--64299	41	4.7	41	70	8	126	33	20	22	23	1.97
64437--64493	23	2.5	23	91	0	87	29	45	0	24	1.53
68645--68940	43	7.1	43	74	7	189	27	16	27	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68645--68946	86	3.6	85	74	12	268	27	16	27	28	1.97
70667--70732	29	2.3	29	91	0	105	36	18	15	30	1.91
80317--80427	56	2.0	56	83	3	143	19	21	30	27	1.98
80781--80808	2	14.0	2	100	0	56	50	0	0	50	1.00
82091--82143	23	2.4	22	75	12	54	56	7	1	33	1.38
89106--89165	29	2.1	29	93	6	104	46	0	33	20	1.51
94300--94346	18	2.7	17	81	12	51	55	2	0	42	1.12
94297--94360	5	12.4	5	72	18	51	54	1	1	42	1.19
100405--100628	117	1.9	117	96	0	412	39	23	15	21	1.92
102331--102379	16	3.1	16	88	2	64	14	0	8	77	0.98
102327--102379	15	3.5	15	80	12	56	15	0	7	77	0.98
102465--102533	34	2.0	35	91	5	113	43	0	2	53	1.15
102497--102531	11	3.2	11	87	0	52	42	0	2	54	1.15
102465--102532	17	4.0	17	76	17	61	42	0	2	54	1.15
103557--103599	22	2.0	23	86	9	63	23	13	20	41	1.88
104430--104751	58	5.5	59	83	4	368	37	29	1	31	1.67
104430--104761	30	11.2	30	79	7	331	37	29	1	31	1.68
106015--106079	17	3.8	17	77	4	76	40	0	4	55	1.21
106015--106095	35	2.3	35	84	0	108	41	1	3	53	1.27
106046--106108	17	3.7	16	81	12	63	47	1	1	49	1.20
106032--106106	35	2.1	35	82	4	89	45	1	2	50	1.24
106135--106214	24	3.4	24	66	20	69	43	27	11	17	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106145--106222	25	3.2	25	66	20	74	41	30	11	16	1.84
106135--106255	48	2.5	48	95	1	217	44	28	9	16	1.80
106868--106902	3	11.7	3	100	0	70	65	0	0	34	0.93
107897--108196	30	10.1	30	80	8	301	35	30	2	32	1.72
107896--108192	119	2.5	118	87	6	404	35	29	2	32	1.71
107897--108192	60	5.0	59	86	5	384	35	29	2	32	1.71
107897--108220	59	5.5	59	83	7	349	34	29	3	33	1.73
113497--113586	40	2.3	39	83	9	103	48	3	5	42	1.43
115606--115647	18	2.3	18	87	0	57	35	0	2	61	1.09
115656--115685	15	2.0	15	93	0	51	10	0	6	83	0.81
117721--117825	24	4.4	24	92	0	165	31	25	19	23	1.98
117711--117827	48	2.4	48	85	0	162	32	25	18	23	1.97
117855--118029	82	2.1	82	89	0	260	32	28	15	24	1.95
119479--119517	18	2.2	18	100	0	78	28	23	10	38	1.87
120983--121024	22	1.9	22	90	0	66	35	4	2	57	1.33
120977--121024	22	2.1	22	84	3	60	37	4	4	54	1.39
124254--124308	28	2.0	28	82	13	69	72	1	10	14	1.19
125716--125750	18	1.9	18	88	0	52	45	0	2	51	1.16
125892--125960	17	4.2	17	68	17	56	60	0	1	37	1.06
139797--139935	72	1.9	72	86	2	199	28	33	16	21	1.95
143553--143617	30	2.1	31	88	2	96	44	1	1	52	1.19
145116--145195	32	2.6	32	84	7	85	22	10	13	53	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145417--145573	59	2.6	60	80	7	160	47	13	14	24	1.80
146564--147055	246	2.0	246	89	0	761	39	13	15	30	1.86
149360--149413	23	2.2	25	77	6	58	27	9	1	61	1.37
150064--150104	6	6.8	6	97	0	64	0	21	0	78	0.76
154545--154574	6	5.0	6	91	0	51	80	0	3	16	0.85
178938--179004	16	4.1	17	88	5	102	40	0	1	58	1.07
178934--179020	6	15.2	6	74	12	76	42	0	2	55	1.12
178938--179004	33	2.0	33	88	5	100	40	0	1	58	1.07
179391--179429	13	3.1	13	81	7	53	51	0	2	46	1.14
179408--179440	16	2.1	16	94	0	57	60	0	3	36	1.12

Tables:   1   2