genome.fa.s13933.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01013933.1 Kokia drynarioides strain JFW-HI SEQ_128963, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81255

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6397--6480	41	2.0	41	93	0	141	33	8	20	38	1.82
9175--9240	34	1.9	34	81	6	80	50	13	19	16	1.78
9175--9232	17	3.4	17	82	0	71	50	13	18	17	1.79
11395--11425	16	1.9	16	93	0	53	61	0	16	22	1.34
11557--12039	245	2.0	245	94	0	842	37	21	12	28	1.90
12543--12631	37	2.4	37	92	0	151	19	13	33	33	1.90
14264--14342	14	5.7	14	75	3	70	45	18	17	17	1.86
14247--14338	27	3.4	27	83	3	105	44	19	17	18	1.87
14268--14340	28	2.6	28	82	2	94	47	19	16	16	1.82
15429--15535	23	4.7	23	86	0	151	47	15	4	31	1.66
15783--15856	36	2.1	36	94	0	130	36	25	8	29	1.85
21599--21636	17	2.2	18	86	13	53	60	10	13	15	1.59
22015--22071	3	19.0	3	75	13	55	1	29	0	68	1.00
22018--22071	18	3.1	17	89	5	72	1	29	0	68	1.00
23233--23431	100	2.0	99	98	0	380	27	21	19	31	1.97
36925--36952	9	3.1	9	100	0	56	0	21	0	78	0.75
52701--52854	23	6.7	23	90	0	236	47	16	3	31	1.65
68845--68904	26	2.3	26	88	0	93	65	5	5	25	1.34
68855--68912	26	2.2	26	84	0	71	63	6	5	24	1.40
72184--72222	13	2.8	13	84	7	51	51	12	0	35	1.40
76648--76802	80	1.9	81	90	3	251	41	3	21	32	1.71
76758--76911	82	1.9	82	87	5	231	35	9	18	36	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79844--79886	6	7.2	6	97	0	77	16	65	0	18	1.28

Tables:   1

The End!