genome.fa.s14112.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014112.1 Kokia drynarioides strain JFW-HI SEQ_129143, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  360202

Tables:   1   2   

This is table  2  of  2  ( 163 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
191538--191954	39	10.7	39	71	11	221	28	21	28	21	1.99
191655--192011	156	2.3	156	85	1	450	27	21	27	22	1.99
204243--204315	29	2.6	29	82	10	80	38	2	20	38	1.67
204290--204420	57	2.3	56	83	10	153	34	5	25	34	1.79
204342--204469	28	4.5	29	70	13	95	35	3	27	34	1.73
204313--204437	57	2.2	57	84	2	162	32	4	28	33	1.78
205890--205973	6	14.8	6	72	14	54	55	4	1	38	1.28
205888--205973	34	2.6	32	81	9	109	56	4	1	37	1.27
205890--205967	17	4.7	16	76	10	77	55	5	1	38	1.30
206918--206956	20	2.0	20	90	5	62	46	5	5	43	1.48
208107--208613	252	2.0	253	98	0	971	39	8	9	41	1.70
209147--209235	27	3.3	27	91	0	142	26	19	19	34	1.95
209243--209330	24	3.7	23	80	11	97	23	25	26	25	2.00
219310--219357	18	2.7	18	90	0	78	45	16	22	14	1.84
224967--225001	18	1.9	18	88	0	52	42	17	11	28	1.83
231626--231669	18	2.5	18	88	3	63	15	13	13	56	1.67
237175--237212	18	2.1	19	90	5	60	0	26	5	68	1.11
247148--247183	15	2.5	15	86	4	56	13	13	5	66	1.41
250018--250049	15	2.1	16	94	5	57	78	0	21	0	0.76
269099--269142	21	2.2	20	84	11	56	43	4	0	52	1.22
269108--269151	21	2.2	20	87	4	61	45	4	0	50	1.22
275795--275995	25	8.0	25	86	0	267	22	17	25	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
281443--281521	25	3.2	25	75	0	86	26	16	18	37	1.92
282666--282704	20	2.0	20	89	0	60	10	15	20	53	1.70
283842--283868	2	13.5	2	100	0	54	48	0	0	51	1.00
289589--289653	28	2.3	28	86	5	96	12	21	24	41	1.87
294936--294993	21	2.8	21	76	10	64	43	1	0	55	1.10
299900--299949	24	2.1	24	84	0	64	26	14	8	52	1.68
303670--303707	7	5.4	7	87	9	51	31	0	13	55	1.38
303664--303707	14	3.3	13	84	12	54	31	0	11	56	1.35
305558--305796	119	2.0	120	86	0	336	30	14	25	29	1.95
308562--308643	37	2.2	37	93	0	137	10	19	35	34	1.87
310963--311240	24	11.6	24	92	0	466	27	24	23	25	2.00
312210--312365	78	2.0	78	100	0	312	39	19	2	38	1.65
316219--316274	27	2.1	27	82	0	67	19	26	17	35	1.94
336961--337078	45	2.6	45	87	0	164	23	25	10	40	1.86
344378--344402	4	6.2	4	100	0	50	24	0	0	76	0.80
344623--344665	17	2.4	18	85	14	54	30	2	4	62	1.28
348234--348279	16	2.9	16	87	6	67	47	0	13	39	1.42
348448--348489	21	2.0	21	90	0	66	52	0	2	45	1.13
348458--348572	61	1.9	61	87	7	171	53	2	1	41	1.25
348585--348627	16	2.7	16	79	10	52	46	0	0	53	1.00
355661--355796	36	3.8	36	90	0	175	24	13	27	34	1.93

Tables:   1   2

The End!