genome.fa.s14177.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014177.1 Kokia drynarioides strain JFW-HI SEQ_129210, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  757717

Tables:   1   2   

This is table  1  of  2  ( 184 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4709--4853	74	2.0	74	97	0	272	37	17	15	28	1.91
10813--10873	31	2.0	31	87	9	90	36	6	18	39	1.76
11216--11257	21	2.0	21	90	0	66	38	19	7	35	1.79
19774--19824	26	2.0	26	84	0	66	49	11	11	27	1.74
25455--25484	2	15.5	2	93	6	53	50	0	0	50	1.00
26781--26899	58	2.1	58	91	0	193	42	10	21	26	1.85
30593--30640	25	1.9	25	87	8	71	54	14	2	29	1.52
30559--30728	84	2.0	84	94	2	297	36	17	5	40	1.72
30677--30724	25	1.9	25	87	8	71	54	18	2	25	1.55
44797--44873	26	3.1	24	70	22	61	40	0	7	51	1.31
45032--45115	24	3.8	22	74	13	75	38	1	2	58	1.19
47193--47234	18	2.3	19	91	4	68	0	23	0	76	0.79
48284--48323	12	3.4	11	86	13	53	2	30	0	67	1.04
48291--48325	12	2.9	12	88	12	54	5	28	0	65	1.15
63459--63540	40	2.0	40	100	0	164	54	0	14	30	1.40
68375--68421	25	1.9	25	91	4	78	19	6	10	63	1.47
71885--71915	16	1.9	16	93	0	53	25	3	38	32	1.72
77904--77934	9	3.4	9	95	0	53	35	0	29	35	1.58
85435--85566	70	1.9	70	85	3	185	25	29	15	29	1.96
99265--99305	21	2.0	21	85	0	55	21	21	26	29	1.99
99562--99595	17	1.9	17	88	5	50	52	32	2	11	1.53
100882--100931	21	2.5	20	81	12	59	20	10	0	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102473--102501	13	2.1	14	93	6	51	75	3	0	20	0.94
102742--102769	5	5.6	5	100	0	56	82	0	0	17	0.68
103017--103064	20	2.4	20	93	6	80	50	0	0	50	1.00
103950--104053	26	3.7	28	78	16	117	50	0	0	49	1.07
103958--104007	25	2.0	26	96	4	93	50	0	0	50	1.00
105913--106082	50	3.4	50	70	6	137	27	17	20	34	1.95
105905--106351	100	4.3	101	78	7	396	25	18	19	37	1.94
106116--106294	50	3.6	50	73	11	168	22	18	19	39	1.93
105911--106294	213	1.8	213	84	0	534	25	18	19	36	1.95
107079--107317	127	1.9	127	82	5	304	20	22	14	42	1.88
115151--115197	16	2.9	16	78	15	51	23	19	6	51	1.70
122608--122739	69	1.9	69	100	0	264	22	22	26	28	1.99
122621--122729	33	3.2	33	63	25	82	23	23	23	28	2.00
137870--137902	15	2.1	16	94	5	59	0	15	0	84	0.61
138943--138987	21	2.1	21	84	8	56	2	37	0	60	1.09
151758--151801	12	3.7	12	79	11	54	20	22	20	36	1.95
155783--155839	29	1.9	29	82	3	69	61	7	10	21	1.52
159668--159761	41	2.3	41	90	0	143	39	26	5	28	1.78
166541--166592	6	9.0	6	93	6	90	30	0	0	69	0.89
166540--166603	12	4.5	15	80	18	50	29	1	0	68	0.99
167773--167801	2	14.5	2	100	0	58	0	0	48	51	1.00
176041--176076	16	2.1	16	90	10	54	72	5	2	19	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178147--178248	37	2.7	38	81	4	118	30	17	21	30	1.96
182918--182970	24	2.2	24	82	0	61	30	13	7	49	1.69
184884--184946	24	2.6	24	89	0	99	26	15	7	49	1.72
185284--185317	18	1.9	17	88	5	50	50	29	0	20	1.49
188557--188586	13	2.2	13	94	5	51	6	10	0	83	0.81
207409--207459	26	2.0	25	92	3	84	50	3	0	45	1.20
209446--209489	23	2.0	20	87	12	61	27	4	20	47	1.69
209563--209609	17	2.7	17	80	9	51	59	2	14	23	1.46
210004--210041	4	9.5	4	88	0	58	21	0	2	76	0.91
218391--218457	3	22.3	3	100	0	134	67	0	0	32	0.91
227753--227803	27	2.0	26	88	7	77	50	0	0	49	1.00
227752--227832	9	9.8	9	66	26	54	50	0	0	49	1.00
227778--227809	11	3.1	11	91	8	50	46	0	0	53	1.00
228170--228238	24	2.9	24	95	0	129	42	15	15	26	1.88
229444--229575	10	13.8	10	65	15	55	34	3	1	61	1.21
229512--229570	19	3.2	19	78	2	66	28	3	0	67	1.06
229508--229561	28	1.9	28	88	0	81	35	3	0	61	1.14
230851--230893	2	21.0	2	95	4	77	2	48	0	48	1.14
232678--232809	27	4.9	27	74	0	129	33	28	16	21	1.95
232678--232808	54	2.4	54	87	0	181	33	29	16	21	1.95
232800--233149	174	2.0	174	93	1	603	33	20	20	25	1.97
236284--236323	20	2.1	19	85	4	53	25	30	0	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238860--238912	21	2.5	20	79	14	54	45	0	1	52	1.11
244574--244658	30	2.9	30	76	1	73	23	23	30	22	1.99
248530--248573	22	2.1	22	88	12	67	45	0	20	34	1.51
253275--253310	3	12.0	3	100	0	72	33	0	0	66	0.92
253602--253781	70	2.6	68	81	7	200	44	12	6	36	1.69
258211--258261	26	1.9	27	88	11	79	17	17	17	47	1.84
259549--259581	17	1.9	17	100	0	66	54	12	9	24	1.66
272659--272692	13	2.8	12	86	4	50	14	5	8	70	1.31
280468--280520	21	2.5	21	80	17	65	30	9	22	37	1.86
283763--283898	69	2.0	69	97	0	254	36	17	21	24	1.94
287900--287952	21	2.6	19	75	16	52	28	13	24	33	1.93
301033--301066	17	1.9	17	88	5	50	44	2	5	47	1.42
312739--312786	18	2.5	19	83	13	62	25	39	6	29	1.80
328161--328348	24	7.8	24	85	0	232	34	19	23	23	1.97
328161--328348	72	2.6	72	86	0	259	34	19	23	23	1.97
332751--332842	20	4.6	20	75	8	80	30	5	16	47	1.69
337387--337413	2	13.5	2	100	0	54	0	48	0	51	1.00
338370--338438	19	3.2	22	74	16	72	28	11	5	53	1.60
338382--338445	22	3.0	22	75	13	80	28	14	4	53	1.60
342776--342951	61	2.9	61	84	2	219	22	10	12	55	1.67
343176--343265	32	2.8	32	83	6	103	52	6	12	28	1.64
343192--343265	30	2.3	32	84	9	98	52	5	12	29	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343593--343630	5	7.8	5	83	16	53	2	15	0	81	0.80
349978--350003	2	13.0	2	100	0	52	50	0	0	50	1.00
360350--360404	27	2.0	27	100	0	110	49	3	14	32	1.61
368648--369393	247	3.0	247	99	0	1465	31	16	13	38	1.87
373317--374275	476	2.0	476	98	0	1839	32	16	20	30	1.94
375329--375393	24	2.7	24	95	0	112	30	10	1	56	1.42
375339--375409	24	3.0	24	91	0	97	29	12	4	53	1.57
376843--376872	16	1.9	15	93	6	51	40	13	6	40	1.71
379858--379922	31	2.1	31	100	0	130	40	3	12	44	1.57
382830--382873	22	2.0	22	86	0	61	79	2	4	13	0.98
386656--386705	26	1.9	26	87	0	73	28	20	24	28	1.99
387497--387527	16	1.9	16	93	0	53	22	16	0	61	1.34
390687--390745	29	2.0	31	86	6	86	1	33	0	64	1.04
400298--400351	26	2.1	26	85	0	72	31	24	18	25	1.97
414493--414578	37	2.3	38	86	9	124	33	16	23	26	1.95
415127--415160	15	2.2	16	89	5	52	5	17	0	76	0.98
418688--418726	6	6.5	6	87	0	51	23	30	0	46	1.53
421864--421917	26	2.1	26	96	0	99	27	22	22	27	1.99
422023--422103	37	2.2	37	84	8	119	27	19	28	24	1.99
437112--437230	63	1.9	63	96	0	220	29	10	6	53	1.60
442276--442360	38	2.2	38	85	4	109	25	18	22	32	1.97
444743--444789	24	2.0	24	87	8	69	25	14	10	48	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452909--452944	19	1.9	19	88	5	56	5	8	30	55	1.52
454969--455019	20	2.7	18	74	17	50	60	7	5	25	1.47
456810--456837	13	2.2	13	100	0	56	25	14	28	32	1.94
460176--460202	12	2.2	12	100	0	54	66	7	0	25	1.17
477166--477208	17	2.3	19	84	11	54	67	4	9	18	1.36
495961--495995	17	2.1	17	88	0	52	40	2	22	34	1.69
503439--503502	26	2.5	26	100	0	128	32	6	20	40	1.77
510409--510442	18	1.9	17	88	5	50	23	11	8	55	1.63
517744--517800	18	3.4	17	76	20	57	70	0	26	3	1.03
517757--517799	21	2.1	20	86	4	59	72	0	25	2	0.97

Tables:   1   2