genome.fa.s14177.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014177.1 Kokia drynarioides strain JFW-HI SEQ_129210, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  757717

Tables:   1   2   

This is table  2  of  2  ( 184 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522652--522684	17	1.9	17	93	0	57	9	9	3	78	1.05
534256--534324	33	2.1	33	94	0	120	47	17	1	33	1.56
542019--542063	2	22.5	2	90	0	72	0	46	2	51	1.13
542404--542470	31	2.3	27	78	14	71	38	4	10	46	1.59
543137--543179	19	2.3	18	88	4	59	25	2	2	69	1.12
543152--543181	14	2.1	15	93	6	53	30	0	0	70	0.88
547128--547192	15	4.5	15	71	21	50	58	6	10	24	1.54
547419--547469	4	12.8	4	77	22	54	78	1	0	19	0.85
547419--547473	12	4.7	11	83	16	67	80	1	0	18	0.81
547973--548013	21	2.0	21	85	9	57	39	9	0	51	1.35
549378--549849	51	9.3	50	69	14	204	27	19	17	35	1.94
549304--549838	50	10.6	50	69	13	249	28	20	17	34	1.95
549305--550094	99	7.8	100	74	7	515	28	20	16	34	1.95
549303--550094	304	2.6	300	87	5	1083	28	20	16	34	1.94
550954--551007	19	3.1	19	84	10	71	0	18	0	81	0.69
550959--551004	6	7.7	6	92	7	76	0	15	0	84	0.62
557802--557860	10	6.0	10	75	13	52	5	18	0	76	0.97
575070--575135	34	1.9	34	100	0	132	33	13	27	25	1.94
577377--577424	13	3.8	13	76	13	55	60	16	22	0	1.36
577364--577427	26	2.4	26	97	2	119	65	12	21	0	1.25
577378--577422	14	3.4	14	71	22	51	62	15	22	0	1.33
598748--598782	18	1.9	18	88	0	52	25	17	28	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
607620--607674	24	2.2	24	83	3	65	49	10	14	25	1.76
610134--610190	3	19.0	3	79	13	64	0	28	0	71	0.86
610134--610190	18	3.2	17	92	7	87	0	28	0	71	0.86
616191--616251	18	3.4	18	90	0	86	19	18	24	37	1.94
617758--617805	24	2.0	24	91	0	78	43	12	16	27	1.84
628476--628579	36	2.9	36	86	0	154	33	15	25	25	1.95
630030--630071	15	2.7	16	85	3	50	26	4	0	69	1.08
644565--644598	9	3.8	9	84	0	50	70	0	29	0	0.87
653455--653498	20	2.2	20	88	8	63	72	9	0	18	1.10
653468--653519	25	2.0	26	85	10	72	71	5	0	23	1.07
653489--653531	16	2.7	16	81	0	50	67	6	2	23	1.27
653792--653862	27	2.8	24	78	16	79	73	1	4	21	1.08
653794--653864	8	8.2	8	73	13	52	74	1	4	19	1.06
654347--654406	25	2.3	26	88	5	95	35	10	0	55	1.34
663562--663605	20	2.0	20	83	12	52	63	0	29	6	1.20
664520--664576	16	3.2	19	83	14	68	31	0	3	64	1.10
668235--668321	45	2.0	44	88	2	129	31	11	27	29	1.92
668370--668452	35	2.3	36	83	4	96	32	14	26	26	1.95
669871--670034	25	6.6	25	84	4	179	31	25	21	21	1.98
670221--670258	20	1.9	20	88	0	58	52	13	2	31	1.54
676387--676437	25	2.0	25	96	0	93	39	11	21	27	1.88
677824--677870	18	2.6	18	96	0	85	4	29	12	53	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
678138--678191	24	2.2	24	83	6	65	0	40	1	57	1.09
685592--685632	17	2.4	17	80	19	50	53	17	14	14	1.73
686427--686519	47	2.0	47	91	0	150	22	19	32	25	1.97
697578--697650	36	2.0	36	100	0	146	34	8	19	38	1.81
717138--717188	21	2.4	21	90	0	75	29	33	13	23	1.93
717823--717947	43	2.9	43	79	9	146	26	25	11	36	1.89
723305--723357	21	2.5	21	84	0	70	28	26	11	33	1.91
724097--724213	41	2.8	41	86	1	144	25	29	10	34	1.89
731226--731333	49	2.2	49	90	3	164	37	16	7	37	1.77
736487--736537	6	8.8	6	87	10	63	0	13	1	84	0.71
736487--736537	11	4.4	12	83	16	63	0	13	1	84	0.71
745640--745671	16	2.0	16	93	0	55	53	0	18	28	1.45
746121--746190	24	2.9	24	87	4	97	25	22	24	27	2.00
753359--753408	26	1.9	26	83	0	64	38	18	4	40	1.69
753902--753942	21	2.0	22	85	9	59	63	0	4	31	1.15
754602--754660	17	3.4	17	75	15	57	71	3	1	23	1.11
755642--755801	80	2.0	80	100	0	320	42	5	8	43	1.57
756120--756171	22	2.3	23	90	6	79	42	0	5	51	1.25
756699--756748	20	2.5	21	83	9	77	60	0	4	36	1.16
757232--757271	18	2.2	18	90	0	62	37	5	2	55	1.35

Tables:   1   2

The End!