genome.fa.s14197.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014197.1 Kokia drynarioides strain JFW-HI SEQ_129230, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  282627

Tables:   1   2   

This is table  2  of  2  ( 192 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186080--186154	14	5.4	14	76	6	53	22	1	28	48	1.59
186122--186161	7	5.7	7	90	0	53	20	0	32	47	1.50
186065--186139	21	3.6	21	87	3	98	18	2	28	50	1.60
186122--186161	21	1.9	21	89	0	62	20	0	32	47	1.50
187436--187475	16	2.6	16	88	4	55	35	0	7	57	1.27
194788--194896	48	2.3	48	87	4	159	45	8	21	24	1.79
194817--194929	48	2.4	48	80	3	120	43	14	20	22	1.87
198404--198440	18	2.1	18	100	0	74	24	10	16	48	1.77
202216--202263	3	16.0	3	91	0	78	33	4	0	62	1.14
202562--202605	20	2.1	20	87	8	61	36	6	9	47	1.62
202679--203058	51	7.7	49	68	15	176	42	2	8	45	1.50
202619--203117	146	3.4	144	86	7	673	42	3	8	45	1.51
204813--204862	20	2.3	20	80	10	55	26	6	12	56	1.58
216373--216782	42	10.3	42	79	8	364	22	17	23	36	1.95
216542--216634	30	3.1	30	92	1	141	21	18	32	27	1.97
216422--216759	187	1.8	187	84	2	464	23	18	24	34	1.96
216761--216793	16	2.0	17	88	5	50	18	18	6	57	1.60
217222--217251	3	10.0	3	100	0	60	33	0	0	66	0.92
217678--218329	146	4.4	147	86	6	856	41	2	9	45	1.51
218033--218085	22	2.3	23	80	6	63	41	1	5	50	1.36
218038--218086	23	2.2	23	85	7	66	44	0	6	48	1.27
219515--219682	73	2.3	72	78	4	185	22	25	21	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
223390--223419	2	15.0	2	100	0	60	50	0	0	50	1.00
223761--223810	14	3.3	15	77	8	57	32	6	0	62	1.20
224573--224637	17	3.8	17	78	11	78	36	1	4	56	1.29
224572--224653	35	2.3	35	85	0	110	39	2	3	54	1.31
224604--224666	17	3.7	16	77	12	54	47	1	1	49	1.20
224590--224664	35	2.1	35	82	4	89	42	2	2	52	1.29
226486--226774	29	9.8	29	72	11	198	35	25	4	33	1.77
226505--226897	58	6.7	57	78	7	323	33	26	5	34	1.79
226505--226912	117	3.5	116	79	9	356	34	26	5	34	1.80
226518--226774	87	2.9	87	76	13	242	36	26	4	33	1.76
226759--226919	28	5.6	28	69	14	112	31	24	7	36	1.83
226551--227012	58	7.9	58	78	9	290	32	25	6	35	1.81
226760--226978	29	7.6	28	67	18	112	30	23	7	38	1.82
226521--227012	117	4.2	115	78	10	355	32	26	6	35	1.81
232555--232588	13	2.7	13	90	4	52	82	0	17	0	0.67
233977--234274	49	6.1	49	74	11	232	38	21	26	13	1.90
233996--234268	97	2.8	100	82	7	292	38	21	26	13	1.91
233943--234210	146	1.8	145	82	4	324	36	22	26	14	1.92
234024--234275	100	2.5	100	81	8	300	39	20	26	13	1.90
234396--234577	101	1.8	101	90	0	292	35	18	15	30	1.92
234411--234577	51	3.3	50	68	12	124	35	17	15	31	1.91
234396--234605	101	2.1	100	86	0	285	36	17	16	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
234659--234872	39	5.5	39	74	6	209	25	32	18	22	1.97
234664--234870	78	2.7	78	89	1	299	24	32	18	23	1.97
234955--235965	206	4.9	206	90	1	1501	35	19	23	22	1.96
236299--236443	17	8.3	18	79	11	151	42	2	2	52	1.27
236299--236443	35	4.2	34	86	5	168	42	2	2	52	1.27
236331--236443	6	19.5	6	69	20	80	45	2	1	50	1.26
236299--236443	52	2.8	52	84	8	163	42	2	2	52	1.27
236332--236425	11	8.2	11	72	20	77	42	3	2	52	1.29
238282--238620	29	11.6	29	72	12	230	35	25	5	33	1.78
238301--238655	59	6.1	59	81	5	348	34	26	4	34	1.78
238554--238705	29	5.2	28	71	17	105	33	25	6	34	1.82
238311--238827	59	8.9	59	76	8	288	32	25	5	35	1.81
238506--238827	58	5.6	57	76	6	215	30	26	7	35	1.83
240615--240639	3	8.3	3	100	0	50	32	0	68	0	0.90
240715--240852	31	4.5	31	69	6	84	23	14	14	47	1.81
240744--240885	60	2.3	61	87	3	198	23	14	18	43	1.86
241075--241100	4	6.5	4	100	0	52	46	0	0	53	1.00
241334--241401	31	2.2	32	86	2	93	54	8	5	30	1.55
241844--241868	13	1.9	13	100	0	50	88	0	0	12	0.53
257793--257824	2	16.0	2	100	0	64	0	0	50	50	1.00
261032--261093	32	1.9	32	100	0	124	30	25	9	33	1.88
263387--263437	17	2.9	17	88	2	75	15	37	0	47	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265069--265108	19	2.1	19	100	0	80	20	20	15	45	1.86
270061--270105	8	5.4	8	79	10	54	80	0	4	15	0.87
273395--273437	19	2.3	19	84	8	52	58	4	0	37	1.19
277755--277885	57	2.3	58	85	5	185	50	16	0	33	1.45
277928--277978	24	2.1	24	96	0	93	31	23	23	21	1.98
278406--278481	34	2.2	34	95	0	134	32	15	14	36	1.88

Tables:   1   2

The End!