genome.fa.s14229.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014229.1 Kokia drynarioides strain JFW-HI SEQ_129262, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  552652

Tables:   1   2   

This is table  2  of  2  ( 196 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383766--383802	18	2.1	18	94	0	65	35	18	13	32	1.90
385410--385440	16	1.9	16	100	0	62	58	16	6	19	1.59
387020--387059	18	2.2	18	90	0	62	37	7	10	45	1.66
388495--388553	29	2.0	29	96	0	109	42	11	28	16	1.84
388503--388562	29	2.2	26	82	11	68	41	15	28	15	1.86
388550--388665	23	5.3	23	70	19	86	44	20	23	11	1.83
388595--388665	23	3.0	23	84	11	90	40	21	26	11	1.87
389598--389686	33	2.7	33	94	5	153	12	30	4	52	1.58
391567--391636	31	2.3	31	92	4	117	35	0	11	52	1.37
400052--400101	21	2.3	21	83	10	57	58	2	4	36	1.29
400051--400101	20	2.4	22	77	12	52	58	1	3	35	1.28
400347--400385	20	1.9	21	84	5	53	30	23	7	38	1.83
403381--403422	6	7.0	6	100	0	84	16	0	66	16	1.25
405050--405092	10	4.4	10	82	11	54	60	4	0	34	1.17
405050--405092	19	2.2	20	84	12	54	60	4	0	34	1.17
405287--405388	10	10.8	9	69	18	57	32	2	3	60	1.30
406941--407002	27	2.2	28	91	5	99	25	11	29	33	1.91
407016--407349	29	11.5	28	79	9	201	33	2	29	33	1.73
406987--407400	58	7.1	59	79	9	363	34	2	29	33	1.72
407075--407400	29	11.2	28	84	7	384	34	2	28	34	1.71
408403--408440	20	1.9	20	88	0	58	47	0	2	50	1.15
409129--409182	6	9.5	6	76	11	60	55	1	0	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409122--409169	16	2.9	16	87	3	60	50	4	2	43	1.33
409129--409182	11	4.8	11	78	13	56	55	1	0	42	1.10
411352--411385	13	2.6	13	85	0	50	58	11	0	29	1.33
412318--412360	17	2.6	16	85	10	52	6	13	0	79	0.93
413272--413318	12	4.1	12	79	17	55	74	2	2	21	1.03
413275--413318	17	2.5	17	85	3	52	75	2	2	20	1.03
413330--413374	15	2.8	16	86	13	65	24	6	2	66	1.27
413349--413389	21	1.9	22	90	5	66	19	4	0	75	0.98
417421--417454	13	2.6	13	85	0	50	58	11	0	29	1.33
418950--419025	40	1.9	39	94	2	134	36	0	3	59	1.16
418949--419008	30	2.0	31	83	3	77	38	0	3	58	1.15
418954--419060	20	5.6	18	71	15	72	36	1	3	57	1.27
418950--419057	39	2.7	38	84	7	126	37	1	3	57	1.27
419600--419638	13	2.9	13	85	7	51	66	5	2	25	1.25
420872--421197	163	2.0	163	98	0	634	34	14	15	35	1.89
421514--421569	21	2.7	21	78	10	69	30	19	17	32	1.95
441037--441090	25	2.2	25	83	6	65	38	0	3	57	1.17
447536--447574	12	3.4	11	86	10	51	43	2	2	51	1.29
454905--454962	22	2.5	23	86	8	73	13	6	10	68	1.37
469310--469359	18	2.8	18	84	0	64	52	2	6	40	1.38
469317--469366	18	2.8	18	84	0	64	48	4	8	40	1.51
471122--471804	228	3.0	228	81	0	765	28	26	24	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480976--481031	24	2.3	25	87	3	78	69	12	3	14	1.31
482783--482827	18	2.5	18	83	16	58	37	2	4	55	1.32
489575--489603	3	9.7	3	100	0	58	0	34	0	65	0.93
492746--493026	139	2.0	139	100	0	562	44	10	8	36	1.69
494596--494641	23	2.0	23	82	4	56	30	13	10	45	1.77
494792--494818	3	9.0	3	100	0	54	66	0	0	33	0.92
495337--495380	16	2.8	16	82	0	52	4	13	2	79	0.98
501855--501888	17	2.0	17	88	0	50	52	0	20	26	1.46
505827--505893	33	2.0	33	100	0	134	38	14	31	14	1.87
507461--507504	21	2.0	22	86	4	63	9	31	2	56	1.43
507496--507530	17	1.9	19	88	11	56	11	17	2	68	1.31
507685--507760	35	2.2	35	92	0	125	31	11	1	55	1.44
508251--508329	35	2.2	36	95	2	142	45	8	6	39	1.61
510313--510363	26	2.0	26	92	0	84	21	11	7	58	1.58
510370--510414	21	2.1	23	84	16	69	15	8	0	75	1.03
510372--510414	22	2.0	20	91	8	68	13	9	0	76	1.01
510447--510479	15	2.1	16	88	5	50	21	6	9	63	1.45
512779--512822	19	2.3	19	80	0	52	38	11	11	38	1.77
524596--524633	19	2.1	19	85	5	51	31	10	2	55	1.48
527394--527548	55	2.8	55	81	1	177	49	11	9	30	1.70
527892--527976	42	2.0	42	100	0	170	43	14	14	28	1.83
528248--528305	26	2.3	26	85	5	75	37	3	3	55	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
532864--533303	60	7.3	59	82	8	417	31	16	14	37	1.90
532873--533325	121	3.8	120	82	7	501	30	16	15	38	1.89
534826--534855	14	2.1	15	93	6	53	70	26	3	0	1.03
541087--541167	17	4.7	17	76	1	81	38	3	4	53	1.41
542787--542922	29	4.7	28	80	13	116	37	26	2	33	1.72
542815--543184	29	12.7	28	73	15	204	33	28	3	34	1.74
542831--543185	59	6.1	58	80	9	305	32	30	3	34	1.73
542872--543142	59	4.6	58	86	4	332	33	28	2	35	1.70
543135--543189	28	1.9	29	88	3	85	29	34	10	25	1.90
543137--543197	28	2.1	29	81	3	70	37	27	9	24	1.87

Tables:   1   2

The End!