genome.fa.s14230.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014230.1 Kokia drynarioides strain JFW-HI SEQ_129263, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  620973

Tables:   1   2   

This is table  2  of  2  ( 221 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252522--252763	56	4.3	56	86	2	326	21	15	26	35	1.94
252544--252736	28	6.9	27	73	10	165	22	16	25	36	1.94
257335--257364	11	2.7	11	100	0	60	46	0	0	53	1.00
259402--259440	6	6.5	6	87	0	51	46	0	30	23	1.53
259544--259646	37	2.7	38	72	6	91	23	19	26	31	1.98
260068--260137	36	1.9	36	94	0	122	35	18	24	21	1.95
261175--261212	16	2.4	16	82	4	51	63	26	0	10	1.27
262101--262160	32	1.9	31	82	3	75	18	8	10	63	1.50
262523--262575	13	4.2	12	74	11	52	16	1	9	71	1.21
262513--262555	21	2.0	22	90	4	70	20	0	6	72	1.08
262544--262581	17	2.2	17	90	9	60	15	2	7	73	1.17
264158--264186	2	14.5	2	100	0	58	51	0	0	48	1.00
274195--274228	14	2.4	14	95	0	59	58	2	0	38	1.13
277915--277945	16	1.9	16	93	0	53	61	0	16	22	1.34
286802--287382	59	9.8	59	81	5	543	33	2	28	35	1.72
286771--287383	89	6.9	88	77	9	491	32	2	28	36	1.72
286771--287382	30	20.7	29	74	11	451	32	2	28	35	1.72
289034--289117	6	14.7	6	69	18	54	48	3	2	45	1.32
289036--289118	17	4.9	17	82	5	96	49	3	2	44	1.32
289036--289118	34	2.4	34	85	0	112	49	3	2	44	1.32
327039--327176	52	2.7	52	84	0	186	25	14	24	35	1.93
337917--337952	9	4.0	9	88	0	54	25	11	11	52	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337917--337955	18	2.1	19	90	4	62	25	10	10	53	1.66
342482--342525	21	2.2	20	84	12	54	47	4	4	43	1.44
343722--343805	31	2.8	31	81	3	91	53	8	11	26	1.65
344279--344316	19	2.0	20	89	5	60	60	0	2	36	1.11
344323--344355	17	1.9	17	88	11	50	54	3	0	42	1.15
347593--347640	19	2.5	19	86	6	62	58	2	8	31	1.39
358239--358283	21	2.1	22	87	4	65	26	2	0	71	0.98
358246--358283	15	2.5	15	83	12	51	28	2	0	68	1.03
365353--365393	17	2.3	18	84	12	50	80	4	7	7	1.02
367610--367670	30	2.0	30	100	0	122	44	9	22	22	1.82
368167--368211	10	4.4	10	81	13	56	68	2	0	28	1.01
368169--368215	20	2.5	18	86	10	67	63	2	0	34	1.06
372252--372295	20	2.2	20	84	8	54	50	6	2	40	1.42
379745--379783	20	1.9	20	85	15	53	41	7	10	41	1.68
384057--384101	21	2.1	21	87	0	63	60	6	2	31	1.35
385394--385446	20	2.6	21	79	5	65	62	3	0	33	1.13
385456--385491	19	2.0	19	89	10	58	61	0	2	36	1.11
386570--386624	23	2.4	23	93	0	92	40	12	16	30	1.86
390724--391348	23	27.2	23	86	0	782	47	13	5	33	1.66
393613--393667	25	2.1	27	83	6	69	18	3	16	61	1.48
394947--394999	27	2.0	27	88	0	79	18	24	9	47	1.78
395245--395284	14	2.9	14	85	3	55	37	15	10	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412833--413026	78	2.5	77	84	6	239	23	27	17	31	1.96
412837--413026	26	7.3	27	83	5	207	23	27	17	31	1.97
412821--413036	52	4.2	53	80	4	217	24	27	15	32	1.95
415329--416333	510	2.0	509	92	1	1672	31	22	11	35	1.89
421472--421685	26	8.2	26	83	3	209	22	29	17	30	1.97
421472--421681	78	2.7	78	82	5	246	23	29	17	30	1.97
430077--430109	15	2.1	16	88	5	50	51	0	0	48	1.00
438699--438759	24	2.5	24	83	0	77	49	9	13	27	1.73
440658--440744	24	3.6	24	85	0	111	54	11	9	25	1.66
443912--443950	19	2.1	19	86	13	55	56	0	7	35	1.28
445113--445150	19	2.0	20	89	5	60	15	23	0	60	1.35
447931--447999	34	2.0	35	86	8	97	56	1	2	39	1.23
447966--448003	19	2.0	20	89	5	60	63	0	5	31	1.17
447967--448012	20	2.4	19	81	3	56	67	0	4	28	1.10
448601--448631	14	2.2	14	94	0	53	19	3	9	67	1.33
456898--456939	22	1.9	22	100	0	84	42	9	14	33	1.78
457313--457365	25	2.2	24	83	16	65	15	20	7	56	1.63
458699--458737	16	2.4	17	87	12	64	46	33	10	10	1.72
458715--458850	37	3.7	37	90	0	209	39	30	16	13	1.87
458666--458766	53	1.9	53	87	0	148	42	30	11	14	1.82
458790--458852	16	3.6	16	72	25	56	36	33	19	11	1.87
462961--463159	37	5.4	37	90	0	317	39	30	16	13	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463587--463615	2	14.5	2	100	0	58	51	0	0	48	1.00
464107--464149	3	14.3	3	100	0	86	67	0	0	32	0.91
471570--471899	23	14.3	23	85	1	293	33	5	15	46	1.68
471569--471899	46	7.2	46	83	1	421	32	5	15	46	1.69
471569--471899	69	4.8	69	84	0	421	32	5	15	46	1.69
471969--472076	36	3.1	36	77	12	100	28	11	25	34	1.90
472003--472069	31	2.2	31	94	0	116	29	11	25	32	1.92
494023--494049	8	3.4	8	100	0	54	66	11	0	22	1.22
497691--497730	21	1.9	21	84	0	53	32	17	22	27	1.96
499336--499380	21	2.1	21	91	0	72	57	6	2	33	1.37
499341--499382	11	3.9	11	81	15	52	54	7	0	38	1.28
501168--501207	19	2.0	20	90	4	64	27	22	0	50	1.50
519919--519981	24	2.6	24	85	5	83	50	7	14	26	1.70
521917--521968	25	2.1	25	82	3	61	55	7	13	23	1.63
525773--525823	3	17.0	3	95	0	93	31	0	1	66	1.03
531721--531759	13	2.9	13	88	3	51	20	17	23	38	1.93
537812--537850	13	2.9	13	88	3	51	20	17	23	38	1.93
540001--540068	27	2.5	27	97	0	127	55	0	39	4	1.20
539999--540068	15	5.1	15	65	19	53	57	0	38	4	1.19
540316--540355	21	1.9	21	89	0	62	70	0	30	0	0.88
540465--540508	18	2.5	17	85	3	52	15	9	15	59	1.61
541899--542095	30	6.6	30	79	5	159	40	2	23	33	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
541899--542099	60	3.4	60	78	3	201	39	2	23	34	1.68
553286--553321	16	2.2	16	95	0	63	58	13	5	22	1.56
556052--556107	25	2.2	25	96	0	103	33	3	23	39	1.72
559819--560374	23	24.2	23	85	0	709	34	5	14	45	1.67
569984--570078	46	2.1	46	100	0	190	47	18	16	16	1.83
570001--570072	22	3.2	22	67	21	67	45	19	18	16	1.85
571008--571084	31	2.5	31	100	0	154	29	16	15	37	1.90
575193--575228	16	2.1	16	90	10	54	44	0	0	55	0.99
579852--579896	21	2.2	20	84	4	54	55	6	2	35	1.38
579874--579915	19	2.2	19	87	8	59	59	0	0	40	0.97
609132--609189	17	3.4	17	75	0	53	20	17	13	48	1.81
609124--609189	34	1.9	34	82	11	82	21	18	13	46	1.83
618473--618519	25	2.0	23	87	8	67	74	2	8	14	1.15

Tables:   1   2

The End!