genome.fa.s14240.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014240.1 Kokia drynarioides strain JFW-HI SEQ_129273, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  412615

Tables:   1   2   

This is table  1  of  2  ( 158 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4454--4509	21	2.7	21	91	0	94	37	10	19	32	1.86
4855--4920	33	2.0	32	85	8	89	36	21	7	34	1.82
7413--7451	21	1.9	20	89	5	60	38	7	15	38	1.76
17333--17563	105	2.2	105	97	0	435	31	17	25	25	1.97
17438--17846	194	2.1	195	81	6	483	28	18	27	25	1.98
36711--36752	7	6.1	7	86	10	52	76	0	23	0	0.79
37660--37703	23	1.9	23	90	0	70	25	11	18	45	1.82
49442--49479	9	4.2	9	90	6	51	78	15	0	5	0.91
49441--49481	21	2.0	20	90	4	64	78	17	0	4	0.93
55488--55536	24	2.0	24	100	0	98	34	28	8	28	1.86
56941--56981	20	2.1	20	90	4	66	56	2	0	41	1.13
61273--61333	17	3.5	17	88	2	86	52	11	16	19	1.74
61273--61341	17	4.0	17	73	16	61	53	10	17	18	1.71
61286--61355	34	2.1	34	83	5	88	54	8	15	21	1.68
67317--67399	18	4.5	18	68	23	57	18	0	32	49	1.48
75152--75376	69	3.2	68	88	3	299	30	14	24	31	1.94
75187--75356	37	4.9	35	70	18	113	31	12	24	31	1.92
76695--76786	48	1.9	48	100	0	184	28	6	21	43	1.77
80023--80057	14	2.5	14	86	13	54	0	17	0	82	0.66
81100--81135	12	3.2	12	85	14	51	0	38	0	61	0.96
88337--88370	14	2.4	14	90	0	50	35	26	11	26	1.91
89014--89043	14	2.2	14	94	5	53	36	10	23	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97711--97767	28	2.0	28	100	0	114	17	10	3	68	1.33
98816--98859	22	2.0	23	86	4	63	34	15	6	43	1.74
100032--100109	39	2.0	39	100	0	156	28	12	7	51	1.67
101841--101891	21	2.4	21	93	0	84	52	31	5	9	1.58
114376--114414	18	2.2	18	100	0	78	41	15	23	20	1.90
116461--116561	46	2.2	46	91	3	168	51	10	20	16	1.75
118746--118799	12	4.3	12	86	13	74	1	22	0	75	0.89
118741--118799	23	2.5	23	83	13	75	3	22	0	74	0.96
120461--120753	144	2.0	145	91	1	473	18	14	20	46	1.84
123928--124350	42	10.4	42	77	11	359	32	27	15	24	1.95
123928--124351	81	5.2	81	86	5	556	32	28	15	24	1.95
125625--125857	52	4.5	52	88	0	349	26	13	24	36	1.92
126485--126539	21	2.6	21	97	0	101	32	9	23	34	1.86
132912--133148	52	4.6	52	91	2	361	24	13	25	35	1.93
137232--137294	32	2.0	32	93	0	108	30	15	19	34	1.93
142804--142865	21	3.1	21	73	17	78	27	9	1	61	1.37
144657--144690	18	1.9	18	88	5	52	23	11	14	50	1.76
155335--155450	56	2.1	56	93	3	198	43	13	12	30	1.81
159193--159720	266	2.0	268	93	1	916	28	14	19	37	1.91
159823--159886	29	2.2	29	82	0	74	12	12	25	50	1.75
160227--160268	5	8.6	5	81	5	50	76	0	4	19	0.96
160801--160830	15	2.0	15	93	0	51	26	16	13	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172507--172550	19	2.2	20	88	4	63	34	34	6	25	1.82
179055--179090	12	3.0	12	87	0	54	50	16	0	33	1.46
179938--180008	37	1.9	37	82	5	90	35	19	18	26	1.95
180135--180182	18	2.6	18	86	3	60	43	8	2	45	1.45
181420--181465	24	1.9	24	90	0	74	39	6	2	52	1.40
184888--184925	20	1.9	20	94	0	67	39	23	5	31	1.77
186541--186670	24	5.4	24	83	3	127	22	26	12	38	1.89
186541--186670	48	2.7	48	87	0	170	22	26	12	38	1.89
186557--186672	24	4.8	24	85	0	160	25	26	10	37	1.88
193201--193262	23	2.6	24	87	5	90	20	20	17	40	1.92
194181--194294	42	2.7	42	84	1	129	32	11	24	31	1.91
194199--194297	21	4.7	21	75	6	92	30	13	27	29	1.94
195410--195535	57	2.2	57	84	4	164	38	20	1	39	1.62
202222--202319	38	2.6	37	80	7	126	29	24	14	31	1.94
202305--202365	26	2.4	26	88	2	88	27	18	26	27	1.98
205995--206061	26	2.6	26	85	0	107	56	2	7	32	1.42
205899--206079	29	6.4	28	67	17	83	52	8	11	28	1.65
209707--209762	21	2.7	21	77	0	58	44	1	0	53	1.11
215997--216026	13	2.2	14	94	5	53	20	10	6	63	1.47
222568--222869	158	1.9	158	85	2	419	23	25	22	28	1.99
228960--228993	6	5.7	6	85	0	50	79	0	20	0	0.73
229839--230108	131	2.1	131	87	0	387	22	22	24	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
242037--242062	12	2.2	12	100	0	52	23	0	7	69	1.14
254363--254407	15	3.1	15	83	3	56	22	8	11	57	1.60
255930--255971	15	2.9	15	86	13	54	19	0	4	76	0.96
259372--259454	33	2.5	33	92	0	139	38	6	13	42	1.69
261145--261297	69	2.2	69	94	0	261	40	30	10	18	1.84
262217--262269	23	2.3	23	80	3	61	67	0	7	24	1.16
262231--262343	29	3.8	29	81	12	133	68	0	3	27	1.12
264029--264360	100	3.4	99	73	11	342	24	21	19	34	1.97
263952--264437	194	2.5	193	89	2	733	25	21	18	33	1.96
275118--275185	29	2.3	29	77	7	75	69	2	2	25	1.17
275158--275229	22	3.3	22	84	0	99	68	1	8	22	1.24
276673--276782	23	4.8	23	87	0	166	46	13	6	33	1.69
276673--276782	46	2.4	46	93	0	193	46	13	6	33	1.69
277587--277629	19	2.3	19	95	0	77	18	2	18	60	1.47
292875--292917	21	2.0	21	100	0	86	18	32	23	25	1.97
300095--300128	2	17.0	2	93	0	59	50	47	0	2	1.16
302955--302980	13	2.0	13	100	0	52	15	23	15	46	1.83
306054--306113	24	2.5	24	91	2	95	21	13	15	50	1.78
308112--308188	35	2.2	35	81	6	86	50	2	3	42	1.34
308675--308699	9	2.8	9	100	0	50	32	24	0	44	1.54
316934--316971	17	2.4	17	86	8	53	55	21	0	23	1.44
319967--319998	7	4.6	7	100	0	64	59	0	12	28	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321057--321090	9	3.7	9	88	7	50	82	8	2	5	0.93
321476--321515	16	2.4	17	83	4	55	77	2	2	17	0.99
323790--323825	18	1.9	19	94	5	65	55	0	0	44	0.99
323787--323827	18	2.2	18	86	4	64	53	0	4	41	1.22
323784--323832	18	2.5	20	74	19	57	53	0	8	38	1.31
328200--328242	21	2.0	21	91	8	70	67	27	0	4	1.10
328520--328558	13	2.9	14	80	7	53	25	0	2	71	0.98
342420--342444	13	1.9	13	100	0	50	88	0	0	12	0.53
342504--342550	21	2.2	21	85	7	60	0	31	14	53	1.42
343915--343943	15	1.9	15	100	0	58	20	27	6	44	1.77
344707--344758	22	2.4	22	100	0	104	32	21	25	21	1.98
348307--348394	15	6.0	14	68	17	54	47	0	2	50	1.13
348284--348450	58	2.9	58	83	5	212	43	1	2	52	1.21
353325--353355	2	15.5	2	93	0	53	51	45	3	0	1.17
357760--357808	24	2.0	25	88	4	73	75	0	14	10	1.04
359230--359387	29	5.3	30	72	16	139	39	17	2	40	1.63
359239--359422	90	2.0	93	86	5	259	40	17	3	37	1.68
359230--359395	30	5.5	30	74	16	155	40	16	2	39	1.62
363766--363792	4	6.8	4	100	0	54	77	0	22	0	0.76
364749--364797	13	4.2	11	78	21	55	79	0	20	0	0.73
364749--364798	6	8.3	6	80	14	59	80	0	20	0	0.72
364749--364797	16	2.8	17	84	15	64	79	0	20	0	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364754--364798	22	2.0	22	91	4	72	82	0	17	0	0.68
365652--365939	49	5.9	49	73	6	210	36	14	26	23	1.93
365719--365938	98	2.2	98	83	4	257	34	14	27	23	1.94
366163--366266	42	2.5	42	85	0	136	29	32	11	25	1.91
366232--366382	46	3.3	46	89	0	212	34	20	17	27	1.95
366427--366573	75	2.0	75	93	0	249	38	17	20	23	1.93
366531--366623	48	1.9	48	84	0	123	40	16	21	21	1.91
366658--366899	122	2.0	124	85	3	328	42	16	19	21	1.88
366799--367033	48	4.9	48	66	15	119	43	15	18	22	1.87
366456--367158	267	2.6	266	85	4	991	41	16	20	21	1.91

Tables:   1   2