genome.fa.s14289.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014289.1 Kokia drynarioides strain JFW-HI SEQ_129323, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  627727

Tables:   1   2   

This is table  2  of  2  ( 212 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261074--261107	18	1.9	17	88	5	50	64	2	26	5	1.30
261146--261187	21	2.0	21	85	0	57	61	0	28	9	1.27
273468--273508	16	2.5	17	84	8	57	36	0	0	63	0.95
274473--274532	24	2.5	23	78	7	66	40	10	1	48	1.47
274791--274819	3	9.7	3	100	0	58	31	0	0	68	0.89
287412--287457	11	4.4	11	81	10	60	47	0	6	45	1.28
287420--287462	20	2.2	20	86	0	59	46	2	4	46	1.36
297499--297534	18	2.0	18	89	10	56	72	0	25	2	0.98
297889--297914	6	4.3	6	100	0	52	84	0	15	0	0.62
302121--302163	21	2.0	22	86	9	61	34	34	13	16	1.88
303439--303483	22	2.0	23	82	4	56	33	4	0	62	1.15
303725--303785	30	2.1	29	90	6	97	22	3	11	62	1.43
319303--319345	17	2.5	17	85	11	52	81	0	16	2	0.79
334102--334168	34	2.0	34	96	0	125	29	25	16	28	1.97
340127--340201	39	1.9	39	97	0	141	37	13	25	24	1.91
340374--340425	25	2.1	25	100	0	104	25	13	19	42	1.87
344100--344258	55	2.9	54	85	6	214	24	25	13	36	1.92
345554--345678	29	4.3	29	84	0	151	40	26	12	20	1.89
357277--357350	37	2.0	37	94	0	130	43	8	22	25	1.81
367122--367146	13	1.9	13	100	0	50	16	0	0	84	0.63
369640--369668	12	2.5	12	94	5	51	6	0	37	55	1.27
370058--370087	16	1.9	16	93	6	53	60	0	16	23	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378010--378051	21	2.0	22	85	4	59	64	4	19	11	1.44
396441--396512	23	3.0	23	76	9	81	50	20	22	6	1.72
403548--403588	18	2.3	18	86	0	55	26	21	21	29	1.99
404267--404316	21	2.4	21	89	0	73	24	16	24	36	1.94
404267--404324	21	2.8	21	86	0	62	27	13	24	34	1.93
410453--410497	18	2.4	18	88	3	63	22	22	24	31	1.99
411666--411734	31	2.4	28	79	13	77	34	14	14	36	1.87
411934--412002	31	2.3	30	82	5	86	44	14	8	31	1.75
412162--412204	21	2.0	23	90	9	72	53	0	0	46	1.00
413663--413719	19	3.0	20	84	7	82	56	3	1	38	1.27
413663--413718	20	2.9	19	86	5	78	55	3	1	39	1.28
418630--418668	13	2.9	13	85	14	53	2	20	0	76	0.90
419266--419309	19	2.2	20	88	4	63	68	4	13	13	1.36
430497--430537	17	2.7	15	88	11	57	58	4	0	36	1.20
432651--433001	24	14.6	24	78	0	342	38	15	23	21	1.92
432651--433001	48	7.3	48	83	0	396	38	15	23	21	1.92
435109--435146	12	3.4	12	82	17	55	78	0	0	21	0.74
435109--435146	17	2.3	16	86	13	51	78	0	0	21	0.74
448396--448441	4	11.5	4	85	0	56	23	28	0	47	1.52
459026--459079	20	2.7	20	78	16	58	14	3	0	81	0.82
459023--459048	6	4.3	6	100	0	52	15	0	0	84	0.62
459032--459090	16	3.6	16	77	9	57	16	3	0	79	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459028--459090	9	5.9	11	79	18	55	17	3	0	79	0.86
460601--460651	24	2.2	24	89	10	79	25	0	3	70	1.04
461429--461489	22	2.8	22	85	7	72	16	11	0	72	1.13
463971--464014	8	5.4	8	81	5	52	13	4	0	81	0.83
463966--464010	18	2.3	21	88	11	69	13	4	0	82	0.82
465538--465585	12	3.9	13	72	22	50	16	6	6	70	1.28
465530--465580	24	2.2	24	86	10	70	19	3	5	70	1.24
466983--467008	6	4.3	6	100	0	52	15	0	0	84	0.62
467000--467037	20	1.9	20	84	10	51	18	5	0	76	0.97
468563--468592	14	2.1	14	93	0	51	16	6	3	73	1.18
470019--470514	134	3.6	133	81	8	532	40	3	9	46	1.52
478051--478108	24	2.4	25	75	18	70	44	0	12	43	1.41
478091--478129	20	2.0	20	84	0	51	51	2	12	33	1.54
478210--478684	239	2.0	236	93	1	815	36	6	15	41	1.73
479266--479403	50	2.8	49	79	2	150	34	17	23	25	1.96
479280--479466	100	1.9	100	80	6	218	35	18	24	21	1.95
480309--480382	22	3.2	23	83	7	87	21	17	2	58	1.51
480708--480757	21	2.5	20	84	12	66	24	0	0	76	0.80
484002--484060	25	2.4	25	86	8	77	76	3	3	16	1.06
489517--489565	13	3.8	14	82	17	61	36	0	14	48	1.44
489517--489565	25	2.0	25	91	0	80	36	0	14	48	1.44
497678--497968	147	2.0	147	89	1	449	22	21	19	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
501008--501077	3	24.3	3	72	18	60	1	30	1	67	1.08
501010--501077	27	2.5	27	79	13	86	1	29	1	67	1.08
502838--502884	24	2.0	24	83	8	60	74	2	8	14	1.15
525514--525549	18	2.0	18	88	0	54	41	13	19	25	1.88
530586--530629	23	1.9	23	85	0	61	38	22	9	29	1.85
535043--535081	6	6.5	6	100	0	78	15	69	0	15	1.20
537393--537430	20	1.9	20	88	0	58	23	13	26	36	1.91
546186--546218	14	2.4	14	90	5	50	12	6	15	66	1.42
546151--546256	48	2.2	48	81	1	122	25	13	10	50	1.72
549298--549347	25	2.0	25	100	0	100	40	20	8	32	1.81
551915--551988	2	37.5	2	76	8	53	41	6	1	50	1.37
551887--551988	16	6.4	16	77	6	109	40	5	1	51	1.37
553368--553765	196	2.0	196	95	0	708	20	9	15	54	1.68
563764--563795	16	2.1	16	88	11	50	9	3	9	78	1.07
568698--568735	18	2.1	18	85	9	51	60	5	13	21	1.52
579814--579861	18	2.6	18	84	15	55	58	2	2	37	1.22
580223--580278	23	2.5	23	91	2	87	51	8	17	21	1.72
589186--589277	36	2.5	35	86	13	141	4	17	5	72	1.20
590175--590212	15	2.5	15	83	12	51	76	0	2	21	0.91
591428--591613	93	2.0	93	96	0	345	32	25	15	25	1.95
602245--602278	16	2.1	16	88	0	50	70	14	2	11	1.27
604056--604093	20	1.9	20	88	0	58	68	5	0	26	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
609287--609350	32	2.0	32	96	0	119	32	9	12	45	1.74
610081--610130	23	2.2	23	82	3	57	58	24	4	14	1.53
620396--620517	37	3.3	37	76	11	106	28	12	25	33	1.92
620492--620570	37	2.1	37	88	0	122	22	11	31	34	1.90

Tables:   1   2

The End!