genome.fa.s14306.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014306.1 Kokia drynarioides strain JFW-HI SEQ_129342, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  546136

Tables:   1   2   

This is table  2  of  2  ( 203 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364103--364170	19	3.6	19	84	7	77	51	8	0	39	1.33
364620--364693	6	12.0	6	71	16	53	41	2	1	54	1.23
364620--364693	23	3.0	23	84	11	85	41	2	1	54	1.23
364614--364665	17	3.0	17	81	10	61	38	0	1	59	1.08
366193--366432	59	4.1	59	78	6	224	35	21	4	38	1.73
366221--366508	59	5.0	54	75	11	182	35	23	3	37	1.73
366355--366522	86	2.0	85	85	5	232	35	28	1	34	1.68
366212--366506	29	10.2	28	74	12	188	36	23	3	36	1.73
366360--366547	86	2.2	84	78	11	213	35	28	2	34	1.69
368988--369036	23	2.2	23	85	7	66	71	0	2	26	0.97
374798--374835	17	2.2	16	86	13	58	44	26	10	18	1.82
374804--374838	17	2.1	17	100	0	70	48	22	11	17	1.79
375067--375102	3	12.0	3	100	0	72	66	0	0	33	0.92
382169--382287	50	2.5	50	78	9	124	30	8	16	44	1.77
382628--382659	14	2.3	14	94	0	55	34	12	3	50	1.56
383069--383108	14	2.9	14	85	3	55	40	0	2	57	1.12
384090--384130	21	2.0	21	90	4	66	60	2	9	26	1.40
384092--384135	20	2.2	20	84	8	54	65	4	9	20	1.38
385015--385048	7	4.9	7	96	0	50	76	0	0	23	0.79
385745--385782	18	2.1	18	95	0	67	23	7	34	34	1.84
385925--386149	46	5.0	43	77	11	150	24	16	27	32	1.96
385950--386156	46	4.5	46	83	5	253	24	14	28	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
385950--386152	93	2.2	91	84	6	261	24	14	28	33	1.94
386248--386861	189	3.2	188	85	3	820	24	24	17	33	1.96
386352--386663	94	3.3	93	69	9	254	24	24	16	33	1.96
386992--387073	42	2.0	42	90	0	128	14	25	17	42	1.87
387081--387264	49	3.8	49	81	1	208	20	25	16	38	1.93
387080--387264	98	1.9	98	84	4	248	21	24	16	37	1.93
387719--387936	113	1.9	112	88	0	328	41	11	18	28	1.85
388246--388393	7	20.7	7	87	9	178	0	17	0	81	0.73
388288--388360	1	73.0	1	75	0	65	0	12	0	87	0.54
389195--389234	17	2.3	17	86	4	53	5	15	0	80	0.88
392766--392816	16	2.9	17	85	14	68	0	29	3	66	1.09
392767--392806	21	1.9	21	85	10	55	0	30	0	70	0.88
403655--403705	7	7.6	7	78	8	52	41	25	17	15	1.89
403651--403705	20	2.8	20	91	0	92	43	23	18	14	1.87
403651--403708	13	4.4	13	82	8	64	43	22	18	15	1.88
403662--403725	33	1.9	33	87	0	92	42	23	18	15	1.89
403651--403735	20	4.3	19	79	8	80	42	21	18	17	1.89
403651--403735	40	2.1	40	86	4	118	42	21	18	17	1.89
403654--403725	7	10.7	7	70	8	51	41	23	19	15	1.89
405683--405756	37	2.0	37	100	0	148	32	10	24	32	1.90
407583--407623	19	2.2	19	91	4	66	70	2	9	17	1.25
408501--408530	15	2.0	15	93	0	51	76	0	0	23	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408977--409010	11	2.8	12	91	8	52	11	0	17	70	1.16
411383--411423	19	2.2	19	86	8	57	68	7	7	17	1.36
413896--413935	18	2.3	18	86	4	55	62	7	0	30	1.23
426994--427051	30	1.9	30	85	0	80	43	12	29	15	1.83
433039--433206	26	6.5	26	86	1	212	24	21	25	29	1.99
444050--444090	17	2.4	17	83	0	55	51	4	14	29	1.63
444486--444524	15	2.6	16	80	16	55	2	30	0	66	1.05
471690--471714	9	2.8	9	100	0	50	56	12	12	20	1.67
478783--478822	20	2.0	20	100	0	80	30	25	15	30	1.95
497839--497882	22	2.0	22	86	4	61	45	0	2	52	1.13
499201--499252	18	2.8	18	82	11	61	30	1	3	63	1.23
503202--503227	7	3.7	7	100	0	52	11	0	0	88	0.52
505556--505612	19	2.9	20	73	5	62	19	1	15	63	1.40
505554--505634	39	2.1	38	81	11	92	19	1	14	64	1.36
507871--507910	12	3.3	12	80	13	55	7	2	17	72	1.19
509639--509669	16	1.9	16	93	0	53	45	22	22	9	1.81
511580--511648	31	2.3	31	89	2	104	60	2	2	33	1.26
511582--511629	11	4.5	11	76	10	55	66	0	2	31	1.03
511576--511618	20	2.0	21	86	8	61	67	0	4	27	1.10
512254--512304	25	2.0	25	96	0	93	23	5	19	50	1.69
515387--515430	20	2.1	22	79	12	56	63	2	0	34	1.07
515450--515498	21	2.3	21	82	6	64	40	0	0	59	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516037--516070	18	1.9	18	88	5	52	29	0	5	64	1.17
522218--522270	24	2.2	24	82	0	61	54	9	3	32	1.50
526815--526852	14	2.7	14	88	8	51	47	2	7	42	1.46
527555--527652	48	2.0	48	94	0	169	25	20	16	37	1.93
529893--530069	30	6.0	29	77	9	162	33	3	20	41	1.71
529904--530069	59	2.8	61	84	8	207	34	3	20	40	1.70
531538--531755	100	2.2	100	77	7	226	25	19	19	35	1.95
531882--531972	39	2.3	40	86	1	121	26	14	27	31	1.95
532023--532155	50	2.7	51	87	4	191	18	25	19	36	1.95
540189--540560	30	12.7	29	76	9	265	34	4	20	40	1.72
540189--540560	60	6.3	60	75	10	313	34	4	20	40	1.72
540377--540567	89	2.1	90	87	2	269	35	3	19	41	1.70
540342--540588	119	2.1	118	82	9	288	34	3	20	41	1.70
540189--540588	143	2.7	148	82	7	428	35	4	20	40	1.72
542880--542912	15	2.1	16	94	5	59	36	21	6	36	1.78
543411--543457	21	2.2	21	100	0	94	25	19	19	36	1.95
545111--545189	32	2.5	32	93	0	131	53	17	2	26	1.57

Tables:   1   2

The End!