genome.fa.s14363.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014363.1 Kokia drynarioides strain JFW-HI SEQ_129400, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42399

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3677--3770	24	4.0	24	79	8	113	21	5	55	18	1.62
3685--3770	45	1.9	45	87	0	127	20	5	54	18	1.64
3685--3770	12	7.4	12	73	12	63	20	5	54	18	1.64
4023--4100	24	3.2	24	65	13	70	19	2	46	32	1.63
4020--4109	27	3.6	27	78	17	120	20	2	47	30	1.62
3774--4912	339	3.4	337	87	7	1599	23	4	46	25	1.70
4362--4439	24	3.2	24	65	13	70	19	2	46	32	1.63
4359--4445	27	3.4	27	77	18	114	18	2	48	31	1.61
4386--4466	21	3.6	21	72	18	72	14	2	54	28	1.53
3774--4541	48	15.8	48	79	5	675	23	4	46	25	1.70
4312--4742	222	1.9	222	88	0	637	22	4	47	25	1.71
4411--4669	126	2.1	126	83	4	317	23	5	47	24	1.72
4507--4573	30	2.2	30	82	10	75	20	2	49	26	1.64
4567--4907	48	7.1	47	81	4	322	21	4	47	26	1.71
4534--4889	96	3.7	96	83	4	416	21	5	47	26	1.71
4677--4810	27	5.4	27	65	20	85	18	5	48	27	1.69
4567--4907	144	2.4	144	81	0	376	21	4	47	26	1.71
4537--4957	96	4.4	95	82	3	407	22	4	46	26	1.72
4537--4915	48	7.9	48	81	2	314	22	4	46	26	1.71
4263--4873	318	1.9	315	90	1	864	22	4	46	26	1.71
7622--7764	47	3.0	47	100	0	286	34	29	14	20	1.93
13679--13712	17	2.0	17	88	11	52	61	0	5	32	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13727--13773	20	2.2	22	85	7	62	76	2	6	14	1.08
15237--15289	27	1.9	27	84	3	70	49	0	22	28	1.50
18049--18098	24	2.2	23	82	7	57	74	2	0	24	0.93
18010--18178	93	1.8	91	82	5	214	53	8	8	28	1.61
23099--23145	21	2.2	22	77	11	53	34	0	4	61	1.15
27290--27374	34	2.5	34	100	0	170	37	10	14	37	1.80
31466--31522	21	2.7	21	97	0	105	47	1	0	50	1.11
39579--39653	39	1.9	39	97	0	141	29	14	25	30	1.95

Tables:   1

The End!