genome.fa.s14373.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014373.1 Kokia drynarioides strain JFW-HI SEQ_129411, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  813680

Tables:   1   2   3   

This is table  1  of  3  ( 271 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188--250	19	3.3	18	75	18	56	69	4	0	25	1.07
3426--3471	20	2.2	21	88	3	67	17	4	4	73	1.15
7050--7080	2	15.5	2	100	0	62	0	0	48	51	1.00
12420--12536	51	2.5	47	79	9	132	48	15	17	17	1.81
16047--16269	121	1.8	123	86	3	326	49	12	14	23	1.77
24545--24581	20	1.9	20	94	5	67	75	0	13	10	1.04
33094--33125	16	2.0	16	100	0	64	62	12	12	12	1.55
38562--38604	18	2.3	19	88	4	61	44	0	11	44	1.40
43799--43851	17	2.9	19	81	10	58	52	0	0	47	1.00
43792--43852	30	2.1	28	90	6	95	54	0	0	45	1.00
47959--47998	21	1.9	21	94	0	71	25	25	7	42	1.80
54766--54811	20	2.3	20	85	7	58	67	6	4	21	1.32
58263--58402	72	2.0	70	81	8	167	67	5	6	20	1.33
58407--58440	13	2.5	14	85	4	52	76	5	0	17	0.98
58385--58436	27	2.0	27	84	3	70	71	7	1	19	1.20
62495--62548	21	2.6	21	76	5	56	31	25	12	29	1.93
63553--63591	20	2.0	19	85	5	51	20	30	5	43	1.73
68082--68134	27	2.0	27	92	0	88	18	24	26	30	1.98
77940--78040	51	2.0	51	88	0	148	34	23	7	33	1.84
79113--79170	16	3.6	16	81	6	64	27	1	22	48	1.60
80420--80524	40	2.6	40	86	0	138	17	27	15	40	1.89
80495--80536	20	2.1	20	90	0	66	9	28	19	42	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90180--90225	23	2.0	22	84	12	58	54	15	8	21	1.68
90792--90863	36	2.0	36	100	0	144	58	8	8	25	1.55
104804--104835	16	1.9	17	93	6	57	65	0	6	28	1.16
106574--106652	12	6.6	12	86	0	77	59	6	6	27	1.46
106607--106652	3	15.3	3	95	0	83	67	2	0	30	1.03
108235--108366	10	13.5	10	68	19	55	62	0	3	33	1.13
108443--108487	22	2.0	23	83	8	58	55	0	6	37	1.26
110660--110724	24	2.7	24	78	2	76	76	9	1	12	1.07
110838--110903	32	2.1	32	91	0	105	36	7	25	30	1.84
112938--113180	101	2.4	101	83	6	314	26	20	18	34	1.96
113544--113710	49	3.4	49	83	0	217	19	27	17	35	1.94
113516--113694	98	1.8	98	84	4	245	18	27	18	35	1.94
114134--114441	113	2.7	113	82	6	390	39	11	19	29	1.86
119267--119334	31	2.2	31	89	0	100	32	7	26	33	1.84
120600--120641	17	2.4	19	80	15	54	21	0	2	76	0.90
120600--120642	14	3.3	13	87	6	61	23	0	2	74	0.93
127544--127575	16	2.0	16	93	0	55	25	18	3	53	1.59
131974--132166	28	6.9	28	82	0	206	42	25	14	17	1.87
131929--132166	84	2.8	84	78	1	217	43	24	13	18	1.86
134294--134369	30	2.5	30	80	16	86	14	14	30	40	1.86
134541--134641	29	3.6	30	72	15	106	20	17	21	39	1.92
144737--144882	37	4.0	37	87	1	179	29	13	24	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144764--144918	73	2.1	73	82	4	188	29	14	21	34	1.93
144737--144949	109	1.9	110	81	6	254	29	14	22	33	1.94
144866--144949	36	2.3	36	85	2	105	28	15	19	36	1.92
147654--147752	26	3.8	26	75	10	94	31	17	24	27	1.97
147645--147755	52	2.1	52	85	3	143	31	17	22	28	1.96
147803--147885	35	2.3	37	87	4	116	32	13	26	27	1.93
149958--150010	19	2.8	19	85	0	61	26	43	11	18	1.84
174147--174180	16	2.1	16	88	0	50	35	2	8	52	1.47
176060--176139	27	2.9	28	83	3	110	23	17	20	38	1.93
182477--182897	138	3.1	136	88	4	630	46	6	7	39	1.57
182873--183019	75	2.0	75	84	2	197	34	10	7	47	1.67
186030--186125	37	2.6	37	85	3	113	30	31	13	25	1.94
190707--190806	37	2.7	37	77	0	101	32	29	16	23	1.95
190798--190914	38	3.1	38	93	1	191	35	24	8	31	1.86
200807--201227	138	3.1	138	91	0	682	44	5	8	41	1.59
201203--201350	75	2.0	76	89	4	228	33	12	7	46	1.70
205419--205534	58	2.0	59	96	1	216	51	6	6	36	1.51
206635--206692	23	2.4	23	82	8	62	12	37	1	48	1.51
213771--213815	19	2.3	20	84	3	56	68	0	2	28	1.01
213756--213816	23	2.9	20	72	23	54	70	0	1	27	0.97
222508--222578	25	2.7	25	89	6	88	25	21	14	39	1.90
222527--222578	25	2.1	25	100	0	104	23	19	17	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225326--225412	16	5.3	17	69	27	62	43	1	2	52	1.21
225331--225406	18	4.4	17	79	12	84	43	1	1	53	1.17
225338--225401	33	1.9	34	93	3	112	40	1	1	56	1.18
225721--225768	20	2.4	20	82	6	62	52	2	0	45	1.12
229402--229431	12	2.6	12	94	5	53	16	16	20	46	1.84
240994--241037	21	2.2	19	84	8	52	70	4	9	15	1.30
240994--241052	20	3.1	18	79	15	57	69	3	8	18	1.28
246271--246308	16	2.5	16	87	8	53	0	44	7	47	1.32
251061--251095	18	1.9	18	88	0	52	0	45	0	54	0.99
261540--261574	7	5.0	7	100	0	70	85	14	0	0	0.59
261708--261748	19	2.2	19	86	0	55	53	14	19	12	1.72
272200--272417	112	1.9	112	81	10	259	27	14	22	35	1.93
281887--282243	182	2.0	181	83	3	450	19	20	25	34	1.96
282103--282262	81	2.0	82	82	8	202	21	18	25	34	1.96
286381--286436	18	3.0	18	76	10	51	55	14	10	19	1.68
286875--286921	18	2.6	18	83	6	51	6	38	4	51	1.47
293185--293218	2	17.0	2	93	0	59	47	0	0	52	1.00
301013--301037	13	1.9	13	100	0	50	48	8	16	28	1.74
303790--303939	81	1.9	81	81	5	187	20	17	24	37	1.94
306402--306463	17	3.6	17	82	2	70	46	8	22	22	1.78
310680--310725	17	2.8	17	83	6	60	0	19	0	80	0.71
311436--311479	20	2.3	19	84	11	54	0	31	11	56	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311465--311509	21	2.1	21	87	0	63	2	28	11	57	1.45
312725--312767	13	3.3	12	81	15	50	65	2	20	11	1.36
323084--323124	21	2.0	21	90	0	64	21	7	26	43	1.79
324316--324359	17	2.7	16	80	13	54	68	2	9	20	1.28
328336--328376	18	2.5	17	84	11	50	60	9	12	17	1.57
328333--328371	18	2.2	18	90	4	62	58	12	12	15	1.62
341366--341444	21	3.8	21	77	3	70	35	25	10	29	1.88
352132--352281	26	6.0	26	66	18	79	28	21	14	35	1.93
354957--355008	27	1.9	27	92	0	86	23	32	25	19	1.97
357575--357644	27	2.6	26	80	10	79	50	0	2	47	1.16
357617--357657	22	2.0	20	85	9	55	56	0	4	39	1.21
357964--358023	15	4.1	15	91	4	95	36	0	0	63	0.95
357964--358023	29	2.1	29	93	0	102	36	0	0	63	0.95
363629--363668	20	2.0	20	85	4	55	27	0	10	62	1.27
369993--370021	13	2.1	14	93	6	51	55	3	20	20	1.58
373996--374021	8	3.2	8	100	0	52	34	15	0	50	1.45
374211--374244	16	2.0	18	88	11	54	2	23	0	73	0.97
374861--374899	20	2.0	19	85	14	53	25	23	0	51	1.49
382333--382404	36	2.0	36	94	0	126	44	8	9	37	1.68
382880--382913	18	1.9	17	94	5	59	17	20	0	61	1.34
382880--382929	16	3.1	16	86	11	59	16	22	0	62	1.33
385179--385250	29	2.4	31	84	11	89	66	0	4	29	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389161--389211	19	2.7	18	79	8	57	82	3	9	3	0.93
389161--389211	18	2.8	18	85	8	68	82	3	9	3	0.93
390335--390373	17	2.4	17	86	4	53	12	2	2	82	0.89
390495--390543	25	2.0	25	84	8	64	24	0	8	67	1.18
403609--403658	21	2.4	21	100	0	100	50	0	42	8	1.32
403880--403924	20	2.2	20	100	0	90	31	26	22	20	1.98
404694--404740	16	2.8	16	83	6	58	76	2	19	2	0.99
412656--412997	100	3.4	98	79	3	364	37	17	17	27	1.92
412560--412998	200	2.2	199	85	2	567	36	17	17	28	1.93
412656--412999	50	6.9	49	70	7	219	37	17	17	27	1.92

Tables:   1   2   3