genome.fa.s14373.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014373.1 Kokia drynarioides strain JFW-HI SEQ_129411, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  813680

Tables:   1   2   3   

This is table  2  of  3  ( 271 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412560--413069	200	2.6	200	81	4	487	37	17	17	28	1.92
414808--414847	8	4.8	8	90	9	62	12	0	2	85	0.71
414803--414845	17	2.4	18	92	7	70	11	0	2	86	0.67
414979--415039	25	2.4	25	78	10	70	26	1	8	63	1.31
414979--415022	12	3.5	12	81	6	52	27	0	6	65	1.17
418318--418370	9	6.4	8	77	14	54	26	0	3	69	1.05
418318--418370	16	3.2	16	76	15	54	26	0	3	69	1.05
421417--421452	19	1.9	19	88	5	56	30	19	13	36	1.91
429010--429035	13	2.0	13	100	0	52	69	0	15	15	1.20
428905--429025	57	2.1	58	87	1	172	46	7	19	27	1.76
432941--433013	26	2.8	26	87	0	101	20	21	35	21	1.96
434170--434211	16	2.6	17	77	11	52	71	0	2	26	0.98
448588--448961	52	7.2	52	85	2	473	26	15	23	34	1.94
448588--448947	156	2.3	156	88	1	535	26	15	23	34	1.94
450862--450898	19	1.9	19	88	0	56	35	18	5	40	1.74
451420--451454	2	17.5	2	100	0	70	51	0	0	48	1.00
454349--454376	5	5.6	5	100	0	56	35	0	0	64	0.94
457217--457257	18	2.3	18	87	8	57	68	0	4	26	1.10
457305--457477	60	2.9	60	75	6	154	38	8	21	31	1.84
457305--457426	30	4.1	29	81	4	127	33	9	23	33	1.86
457305--457479	90	2.0	90	80	5	203	38	8	21	32	1.83
461635--461715	26	3.2	26	85	3	101	29	24	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463361--463412	22	2.4	22	100	0	104	38	13	3	44	1.62
468007--468064	26	2.2	26	78	6	64	17	27	18	36	1.94
468058--468108	22	2.3	22	89	0	75	11	29	21	37	1.89
474335--474422	31	2.8	31	92	1	140	46	18	15	19	1.84
474456--474582	3	42.7	3	81	4	114	61	1	36	0	1.11
474629--474655	12	2.2	12	100	0	54	74	0	25	0	0.83
474654--474692	3	13.0	3	88	0	60	38	0	61	0	0.96
474651--474694	18	2.4	18	92	0	70	43	0	56	0	0.99
474655--474819	21	7.7	21	69	14	77	48	1	48	1	1.20
474658--474779	6	19.8	6	75	8	57	49	1	47	1	1.21
474658--474818	9	17.9	9	70	10	78	49	1	47	1	1.20
474724--474811	30	2.8	31	79	8	99	52	0	45	2	1.13
474836--474888	3	17.7	3	96	0	97	66	0	33	0	0.92
488913--488940	2	14.0	2	100	0	56	50	0	0	50	1.00
489853--489896	23	1.9	23	81	9	54	61	4	6	27	1.41
498758--498819	31	2.0	31	96	0	115	35	20	25	17	1.95
501470--501523	26	2.1	26	100	0	108	42	3	33	20	1.70
506407--506820	23	18.0	23	86	0	578	34	4	13	47	1.65
506900--506990	36	2.5	36	82	7	114	28	9	20	40	1.85
508479--508522	18	2.4	19	84	3	54	15	0	6	77	0.97
508506--508537	13	2.4	14	94	5	57	21	3	0	75	0.95
508515--508574	28	2.1	28	82	11	70	20	13	3	63	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508754--508803	19	2.5	20	83	3	57	24	2	8	66	1.29
510660--510742	28	3.0	28	87	0	130	30	13	30	26	1.94
515808--516352	23	23.7	23	86	0	714	35	4	14	46	1.64
522697--522757	27	2.2	28	82	8	81	19	18	19	42	1.89
522693--522762	27	2.6	26	79	4	77	21	17	20	41	1.90
524789--524832	23	1.9	23	86	9	63	38	18	18	25	1.92
526535--526730	25	7.7	25	88	2	241	33	23	16	26	1.96
529695--529734	10	4.0	10	87	9	55	35	12	2	50	1.54
531148--531208	30	2.0	30	96	0	113	19	18	31	31	1.96
531997--532113	25	4.6	26	82	2	103	32	25	17	24	1.96
532025--532145	25	4.8	25	80	8	111	33	23	17	24	1.96
532025--532139	50	2.3	50	82	7	135	33	25	16	25	1.96
532229--532509	110	2.6	110	87	1	393	31	24	18	25	1.98
534458--534495	20	1.9	20	100	0	76	18	21	5	55	1.62
536319--536720	199	2.0	201	88	2	603	31	17	16	35	1.92
536864--536912	18	2.6	19	90	3	73	63	16	16	4	1.46
536882--536922	18	2.3	18	87	8	57	73	17	9	0	1.09
544236--544287	9	5.6	9	80	8	59	69	1	1	26	1.10
544236--544293	19	3.1	18	85	5	62	68	1	1	27	1.08
544235--544293	10	6.1	10	76	11	52	69	1	1	27	1.07
544235--544293	29	2.0	29	83	0	73	69	1	1	27	1.07
544304--544368	19	3.4	19	70	8	60	60	4	1	33	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
544556--544611	19	2.9	19	80	17	62	26	8	1	62	1.35
544791--545083	85	3.3	85	77	8	300	34	11	17	36	1.86
546059--546086	9	3.1	9	100	0	56	32	0	0	67	0.91
550011--550392	132	2.9	132	84	0	514	31	25	22	20	1.98
550536--550564	2	14.5	2	100	0	58	51	0	0	48	1.00
553642--553740	27	3.6	27	86	6	137	36	20	14	29	1.91
553637--553785	55	2.7	56	83	5	178	37	24	13	24	1.91
553637--553785	28	5.4	28	81	6	169	37	24	13	24	1.91
564692--564721	14	2.1	14	93	0	51	63	20	0	16	1.31
570179--570216	20	1.9	20	88	0	58	57	0	0	42	0.98
570172--570222	14	3.6	14	76	7	50	58	0	0	41	0.98
572512--572623	59	1.9	60	87	3	165	48	10	16	25	1.78
572637--572680	21	2.1	21	83	8	54	22	2	11	63	1.38
573340--573377	17	2.2	17	90	0	58	34	0	5	60	1.19
573357--573388	11	2.9	11	95	0	55	37	3	0	59	1.13
573335--573392	28	2.1	27	87	3	80	34	1	3	60	1.24
574074--574105	3	10.7	3	100	0	64	68	0	0	31	0.90
575157--575638	30	16.5	28	76	10	236	36	24	2	35	1.71
575165--575637	59	8.1	58	74	13	229	36	24	2	35	1.71
575157--575559	59	6.8	58	75	14	247	37	23	2	35	1.71
575215--575647	88	4.9	85	77	13	305	36	24	3	36	1.71
575247--575647	118	3.4	116	79	10	376	35	25	2	36	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
575157--575694	29	18.4	29	75	11	347	36	25	2	35	1.71
580569--580603	12	2.9	12	86	0	52	42	0	34	22	1.54
583899--584048	75	2.0	75	98	0	291	36	18	18	26	1.94
585371--585540	62	2.7	63	90	3	270	53	4	0	42	1.20
585846--585898	28	1.9	27	81	11	63	43	1	1	52	1.23
586114--586163	21	2.3	21	82	6	64	30	0	0	70	0.88
586114--586161	22	2.2	22	85	7	62	31	0	0	68	0.90
586113--586213	23	4.3	23	74	19	68	30	1	1	65	1.15
606945--606994	3	16.7	3	95	0	91	34	0	0	66	0.92
620900--620945	20	2.2	20	85	11	58	41	15	15	28	1.87
621295--621324	12	2.5	12	94	0	51	26	33	20	20	1.97
627911--628009	23	4.3	23	93	5	157	14	19	25	41	1.88
628240--628286	24	2.0	24	83	8	60	53	4	17	25	1.62
629214--629467	37	6.9	37	83	0	303	37	28	16	17	1.91
629212--629430	74	3.0	74	92	1	359	38	28	15	16	1.90
629226--629467	74	3.3	73	88	3	351	37	28	16	17	1.92
632821--632980	52	3.1	52	90	0	257	37	25	12	25	1.91
632826--632984	53	3.0	53	90	0	257	36	25	12	25	1.91
636691--636987	37	8.0	37	87	2	346	33	28	20	16	1.95
636881--636983	16	5.8	16	70	20	71	29	28	25	17	1.97
636897--636967	21	3.6	21	72	18	80	29	26	25	18	1.98
641758--641883	63	2.0	63	96	0	234	37	1	21	39	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
647317--647372	16	3.4	17	75	7	62	35	10	5	48	1.61
663527--663572	18	2.6	18	85	0	56	26	21	26	26	2.00
679638--679684	12	3.9	12	75	10	51	6	17	2	74	1.12
679634--679679	24	1.9	24	100	0	92	6	17	4	71	1.24
691861--691909	24	2.0	24	96	0	89	51	6	30	12	1.64
696403--696438	10	3.5	10	88	3	54	8	8	0	83	0.82
696388--696449	31	2.0	31	83	3	79	9	8	0	82	0.85
696403--696439	11	3.5	11	85	14	51	8	8	0	83	0.80
696398--696438	20	2.0	22	90	9	68	7	9	0	82	0.83
718415--718450	19	1.9	18	88	5	54	75	0	13	11	1.06

Tables:   1   2   3