genome.fa.s14470.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014470.1 Kokia drynarioides strain JFW-HI SEQ_129509, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  254776

Tables:   1   2   

This is table  2  of  2  ( 168 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144699--145295	43	14.0	42	63	15	145	22	21	31	24	1.98
144699--145019	85	3.8	85	85	2	387	23	23	29	23	1.99
144701--145079	86	4.4	86	83	2	415	22	22	30	24	1.99
144953--145189	128	1.9	128	82	1	305	21	21	29	27	1.99
145081--145420	86	4.0	86	81	2	362	22	20	31	25	1.98
144869--145293	214	2.0	212	83	1	537	21	20	32	25	1.98
144872--145303	43	10.1	43	65	14	160	21	21	32	25	1.98
145082--145420	172	2.0	172	83	1	428	22	20	31	25	1.98
145081--145476	86	4.6	86	77	5	334	23	20	31	24	1.98
145097--145477	172	2.2	172	79	1	406	23	20	31	24	1.98
146116--146413	86	3.5	85	84	1	391	21	24	32	21	1.98
148201--148355	30	5.2	30	79	6	170	41	0	22	34	1.59
148217--148356	60	2.3	60	88	0	208	41	0	23	34	1.60
150280--151063	209	3.8	209	84	4	960	22	23	16	37	1.94
150818--150984	85	2.0	85	85	2	228	23	23	15	37	1.93
155025--155172	48	3.1	48	95	0	269	31	21	16	30	1.95
158828--158866	12	3.2	12	81	0	51	12	17	15	53	1.72
162705--162868	29	5.6	29	77	9	129	35	1	26	35	1.67
162871--163086	30	7.2	30	83	6	242	36	2	25	36	1.69
162909--163083	88	2.0	90	86	4	248	37	2	22	37	1.67
163629--163703	35	2.1	35	82	4	89	20	4	1	74	1.05
164567--164593	3	9.0	3	100	0	54	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
174654--174683	15	2.0	15	93	0	51	50	10	0	40	1.36
177512--177545	16	2.1	17	94	5	61	50	17	0	32	1.47
182330--182377	24	2.0	25	84	12	64	70	6	8	14	1.31
197613--197651	15	2.7	14	88	7	60	10	5	7	76	1.13
200553--200582	15	1.9	16	93	6	53	83	0	13	3	0.77
203770--203813	23	1.9	23	86	9	63	56	13	4	25	1.56
203815--203879	25	2.7	25	76	4	62	44	0	0	55	0.99
217010--217445	60	7.4	59	76	10	267	38	2	25	32	1.71
217018--217391	117	3.2	118	78	13	351	40	2	24	32	1.69
217251--217440	30	6.6	29	71	11	131	39	2	24	33	1.67
217251--217440	28	6.6	28	71	11	136	39	2	24	33	1.67
218517--218610	3	30.7	3	69	16	59	37	2	3	57	1.27
230473--230650	42	4.2	41	80	5	196	41	19	17	21	1.90
230473--230650	84	2.1	85	85	5	236	41	19	17	21	1.90
238339--238401	26	2.5	26	79	5	67	60	3	0	36	1.13
238574--238630	29	1.9	30	89	3	89	56	0	0	43	0.99
238579--238639	29	2.3	27	86	11	81	57	0	0	42	0.98
246234--246308	6	13.3	6	75	10	52	74	2	2	20	1.06
246234--246308	16	4.9	16	65	15	59	74	2	2	20	1.06
246235--246306	18	3.9	18	75	14	67	73	2	2	20	1.08
248863--248946	40	2.2	37	81	12	98	65	5	4	23	1.34
249178--249223	22	2.1	23	84	8	60	73	8	0	17	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
249739--249792	23	2.2	23	80	9	54	48	12	3	35	1.60
251715--251772	19	2.9	19	76	5	62	20	3	5	70	1.21
251794--251925	18	7.2	18	69	16	56	21	4	4	69	1.24
252102--252127	4	6.5	4	100	0	52	50	0	0	50	1.00

Tables:   1   2

The End!