genome.fa.s14498.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014498.1 Kokia drynarioides strain JFW-HI SEQ_129537, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  566721

Tables:   1   2   

This is table  1  of  2  ( 203 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1595--1742	72	2.1	72	98	1	289	52	5	14	27	1.63
2488--2594	25	4.2	25	75	8	92	27	16	19	36	1.93
4452--4491	21	1.9	21	94	0	71	42	25	0	32	1.55
4677--4911	116	2.0	116	99	0	461	42	13	10	34	1.78
33456--33511	22	2.5	22	100	0	112	57	0	0	42	0.99
33456--33545	22	3.8	23	84	10	94	51	3	1	44	1.25
33542--33579	18	2.1	19	85	5	51	63	2	0	34	1.09
33907--33985	38	2.1	38	88	4	115	34	5	2	58	1.34
34129--34170	15	2.9	14	89	7	57	33	7	2	57	1.39
37159--37290	16	7.3	16	64	22	57	15	18	32	34	1.92
37157--37374	37	5.9	37	85	4	298	15	17	32	35	1.91
37175--37281	21	5.6	21	65	20	81	14	18	32	34	1.91
44463--44527	16	3.8	16	69	25	51	15	16	30	36	1.90
44458--44631	37	4.7	37	89	0	267	16	17	29	36	1.92
44516--44622	21	5.6	20	65	24	61	14	19	30	34	1.92
44459--44662	37	5.5	37	86	1	149	17	18	29	35	1.93
44458--44662	74	2.8	74	84	1	205	17	18	29	35	1.93
44457--44679	111	2.0	111	82	3	270	17	17	29	35	1.93
47150--47201	21	2.5	21	71	6	52	32	26	11	28	1.91
48711--48940	123	1.9	122	96	0	424	26	13	6	52	1.66
52549--52637	21	4.3	21	85	4	119	30	24	15	29	1.96
61788--61834	25	2.0	22	84	12	58	36	4	0	59	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62944--62995	3	17.3	3	87	0	77	26	0	0	73	0.84
62899--62995	12	8.2	12	76	10	83	23	3	1	72	1.06
68410--68443	18	2.0	17	88	11	52	23	0	5	70	1.09
68411--68465	29	1.9	29	82	10	69	23	1	7	67	1.26
68411--68460	17	2.8	17	77	16	57	20	2	6	72	1.16
87170--87316	41	3.5	41	85	1	186	34	13	26	25	1.93
87240--87334	41	2.3	41	87	3	129	38	12	25	23	1.90
92113--92199	43	2.0	43	100	0	174	16	36	4	42	1.68
98287--98332	18	2.6	18	75	0	56	23	17	21	36	1.94
102318--102361	20	2.2	20	100	0	88	22	31	9	36	1.86
104334--104372	21	1.9	20	94	5	69	0	23	0	76	0.78
107317--107351	15	2.4	15	90	4	54	65	5	14	14	1.44
125134--125199	34	1.9	34	84	6	89	46	13	19	19	1.83
125391--125593	97	2.1	97	98	0	390	27	29	20	22	1.98
155628--155677	20	2.5	20	100	0	100	24	12	0	64	1.27
164632--164695	30	2.2	29	83	8	76	32	10	10	45	1.74
166024--166058	4	8.5	4	87	6	52	77	0	22	0	0.78
171003--171047	20	2.2	20	100	0	90	51	11	13	24	1.73
176275--176372	4	25.8	4	67	24	52	23	2	3	71	1.11
176303--176372	28	2.6	27	84	11	81	22	1	4	71	1.12
178465--178511	19	2.5	19	89	0	67	19	12	10	57	1.64
186972--187579	49	12.3	49	74	10	366	46	17	17	19	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187002--187405	148	2.8	145	81	5	438	46	18	16	18	1.85
186969--187406	97	4.5	99	77	6	394	46	18	17	17	1.85
189207--189239	17	1.9	17	88	11	50	30	0	0	69	0.88
189456--189488	15	2.2	15	89	10	50	30	3	6	60	1.36
189501--189568	29	2.5	25	76	19	73	29	5	5	58	1.45
190786--190849	32	2.0	32	100	0	128	31	18	31	18	1.95
196355--196948	40	14.6	40	82	4	405	22	16	29	31	1.96
196551--196948	42	9.7	42	80	5	345	19	15	31	32	1.93
196517--196948	124	3.5	124	82	3	473	20	15	31	31	1.94
208916--208941	4	6.5	4	100	0	52	0	26	0	73	0.84
220030--220199	87	2.0	86	95	1	304	40	24	10	24	1.86
236002--236154	76	2.0	76	96	0	279	28	16	18	37	1.92
240869--240915	20	2.3	20	82	7	60	57	6	4	31	1.43
241708--241750	21	2.0	20	83	16	52	4	18	9	67	1.36
257862--258152	159	1.8	158	89	0	456	30	24	22	22	1.99
261543--261617	29	2.6	28	77	8	87	50	26	14	8	1.70
262993--263049	29	2.0	29	82	0	69	43	21	1	33	1.63
264551--264649	48	2.1	48	100	0	198	20	27	15	37	1.92
269886--269916	2	15.5	2	100	0	62	0	48	0	51	1.00
278630--278897	42	6.4	41	83	4	259	27	25	10	36	1.89
281542--281657	57	2.0	57	98	0	223	29	28	18	23	1.98
286592--286644	21	2.5	21	84	0	79	28	26	13	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287208--287483	42	6.5	42	81	3	277	28	28	10	32	1.90
287208--287465	127	2.0	127	82	3	306	28	28	10	32	1.89
287879--288196	160	2.0	160	94	1	557	39	14	12	33	1.83
293654--293707	21	2.6	21	82	8	74	31	24	9	35	1.87
294336--294583	42	5.9	42	79	5	225	25	27	12	35	1.91
296785--296809	12	2.1	12	100	0	50	84	0	16	0	0.63
297983--298182	111	1.8	111	88	0	310	27	20	11	40	1.87
298623--299204	49	11.9	48	79	4	425	35	14	26	23	1.94
298623--299171	98	5.6	97	79	4	498	35	14	26	22	1.93
298623--299171	244	2.2	243	78	4	586	35	14	26	22	1.93
298707--299204	195	2.6	194	81	3	516	34	15	26	23	1.94
299513--299796	37	7.7	38	70	16	220	28	22	22	26	1.99
299406--299801	74	5.2	74	86	4	488	28	23	21	26	1.99
299522--299941	74	5.6	75	82	6	212	30	23	19	26	1.98
301235--301261	14	1.9	14	100	0	54	81	0	7	11	0.87
304782--304952	72	2.5	68	82	10	185	37	21	10	30	1.87
304872--304912	20	2.0	20	100	0	82	41	24	4	29	1.75
304826--304964	72	1.9	72	92	0	233	38	23	11	26	1.89
314966--315021	21	2.7	21	77	5	60	26	21	14	37	1.92
321257--321529	42	6.5	43	76	9	188	27	27	9	35	1.88
321255--321526	84	3.2	82	76	8	217	26	27	9	35	1.88
322144--322193	25	2.0	25	100	0	100	44	4	12	40	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335350--335401	18	2.9	18	94	0	86	36	13	9	40	1.77
337290--337314	3	8.3	3	100	0	50	32	0	32	36	1.58
338560--338603	23	2.0	22	86	4	61	31	2	0	65	1.05
338560--338606	12	4.1	11	79	17	51	34	2	0	63	1.06
338770--338811	17	2.6	16	82	14	50	30	0	0	69	0.89
339950--339983	15	2.3	15	90	5	52	52	8	0	38	1.33
341512--341552	19	2.2	19	90	0	64	41	26	4	26	1.76
342486--342570	32	2.6	31	85	7	116	48	20	4	27	1.69
346752--346786	18	1.9	18	88	0	52	71	17	2	8	1.23
357723--357775	24	2.3	23	80	9	63	77	0	16	5	0.96
357722--357772	14	3.4	14	79	12	57	76	0	19	3	0.94
358903--358935	14	2.4	14	100	0	66	36	6	27	30	1.81
370830--370881	24	2.1	25	85	7	70	51	9	9	28	1.66
375693--375725	7	4.7	7	88	11	50	33	0	12	54	1.37
383045--383069	13	1.9	13	100	0	50	24	16	12	48	1.79
395625--395775	76	2.0	76	93	0	257	33	18	18	29	1.95
400112--400162	24	2.1	25	85	10	70	54	0	37	7	1.29
403555--403610	23	2.5	23	88	2	87	17	19	16	46	1.84
403977--404019	19	2.4	18	85	14	54	37	2	2	58	1.24
407232--407305	23	3.1	24	80	7	87	24	18	6	50	1.71
407256--407311	23	2.5	23	91	2	87	19	19	10	50	1.77
407675--407713	18	2.2	18	86	13	55	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
419887--419912	13	2.0	13	100	0	52	38	7	0	53	1.30
433571--433656	42	2.0	42	100	0	172	25	29	9	36	1.87
434963--435008	25	1.9	23	86	8	65	0	28	0	71	0.86
439264--439299	19	2.0	17	89	10	54	22	11	0	66	1.22
450166--450273	54	2.0	55	81	5	130	38	12	6	41	1.69
453956--453990	17	2.0	18	94	5	63	77	0	11	11	1.00
453956--453990	9	4.0	9	92	7	63	77	0	11	11	1.00
456499--456552	21	2.6	21	81	0	72	31	27	9	31	1.88
457192--457447	85	3.0	82	81	8	268	27	25	10	35	1.90
457213--457457	42	5.7	43	85	7	277	27	25	11	35	1.90

Tables:   1   2