genome.fa.s14498.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014498.1 Kokia drynarioides strain JFW-HI SEQ_129537, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  566721

Tables:   1   2   

This is table  2  of  2  ( 203 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457184--457457	43	6.4	43	84	6	301	27	25	10	36	1.88
459096--459224	23	5.6	23	85	0	177	31	5	13	48	1.66
459096--459224	69	1.9	69	88	0	195	31	5	13	48	1.66
459224--459326	10	9.9	10	76	12	91	39	4	19	35	1.73
459209--459394	68	2.6	70	84	6	223	36	4	19	39	1.72
461575--461727	75	2.0	75	92	0	252	32	5	17	45	1.71
462083--462273	36	5.3	36	86	0	229	30	8	23	37	1.85
462077--462273	72	2.7	72	88	1	270	30	8	23	37	1.85
462519--462657	66	2.1	67	89	2	208	19	9	28	43	1.82
462740--462941	23	8.8	23	90	0	307	31	3	14	49	1.62
463005--463043	10	3.8	10	82	3	51	38	2	17	41	1.64
463000--463042	20	2.1	21	87	8	63	37	4	18	39	1.72
462938--463099	68	2.4	68	86	1	225	38	5	17	38	1.73
463873--463976	38	2.7	39	81	1	129	25	14	20	39	1.90
464097--464367	73	3.7	72	76	6	222	23	31	16	28	1.96
469191--469396	43	4.8	43	76	0	189	28	24	15	31	1.96
469191--469390	86	2.3	86	82	0	229	29	25	16	30	1.96
472690--472774	11	7.6	11	69	16	59	40	0	3	56	1.16
472708--472774	27	2.6	27	79	9	70	40	0	2	56	1.14
472690--472774	17	5.0	17	73	8	75	40	0	3	56	1.16
474634--474876	30	8.2	30	71	12	155	34	29	3	31	1.75
474614--474905	59	4.9	58	78	3	235	34	28	4	33	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474687--474841	60	2.6	58	80	3	184	34	29	3	32	1.74
475719--475829	55	2.0	55	96	0	204	30	15	24	29	1.95
480591--481257	205	3.3	205	85	1	809	36	20	21	21	1.95
481569--481654	6	15.2	6	71	16	67	43	1	3	52	1.26
481590--481661	27	2.6	27	86	6	92	41	0	2	55	1.14
481605--481648	10	4.1	10	78	16	52	43	0	2	54	1.12
481569--481648	17	4.8	16	75	4	70	42	1	3	52	1.27
482366--482452	3	29.0	3	75	9	70	57	2	2	37	1.24
483567--483801	30	8.0	28	75	20	162	34	29	3	32	1.76
483595--483806	30	7.2	30	78	8	170	33	30	3	32	1.76
483627--483826	60	3.4	60	83	6	223	33	29	3	35	1.73
487473--487532	18	3.1	19	68	17	59	41	0	5	53	1.23
487515--487561	8	5.9	8	82	0	58	57	0	2	40	1.11
487514--487564	16	3.2	16	82	0	66	52	0	1	45	1.12
487497--487626	34	4.1	34	71	20	120	42	0	7	50	1.31
487474--487595	58	2.1	56	86	8	167	46	0	5	47	1.26
487585--487761	48	3.5	47	79	10	165	41	0	7	50	1.30
487577--487761	56	3.6	52	82	12	231	42	0	7	50	1.29
487495--487688	90	2.1	91	88	5	286	43	0	6	49	1.29
487584--487729	26	5.6	26	68	18	106	42	0	6	50	1.29
487714--487749	8	4.5	8	92	0	63	61	0	0	38	0.96
487515--487741	90	2.5	88	79	13	239	45	0	6	48	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
490268--490367	43	2.4	42	85	8	125	13	26	15	46	1.81
490702--490788	44	2.0	44	100	0	174	59	2	5	32	1.33
490756--490827	28	2.6	28	95	2	128	58	2	5	33	1.36
490712--490844	72	1.9	71	85	10	186	57	3	5	33	1.36
491707--491881	40	4.3	41	76	10	162	17	27	15	40	1.89
493774--493814	20	2.0	20	90	0	64	12	36	29	21	1.90
496281--496536	30	8.6	29	74	10	162	37	3	23	35	1.71
496293--496507	60	3.6	59	80	5	200	36	3	23	36	1.71
498878--498977	49	2.0	49	98	0	191	35	23	15	27	1.94
499881--499920	7	5.7	7	100	0	80	72	0	0	27	0.85
504723--504967	128	1.9	128	85	2	339	26	24	17	31	1.97
504673--504979	43	7.2	43	82	2	330	28	25	16	29	1.97
504673--504979	129	2.4	129	80	1	375	28	25	16	29	1.97
512393--512491	39	2.5	40	81	3	119	17	21	19	42	1.89
516337--516372	17	2.1	17	94	0	63	38	25	5	30	1.78
518243--518291	23	2.1	23	100	0	98	28	24	20	26	1.99
520649--520714	27	2.4	27	75	9	71	46	4	1	46	1.32
522340--522502	81	2.0	81	91	0	263	25	19	15	40	1.90
525943--525976	17	2.0	17	88	0	50	50	0	2	47	1.16
527076--527122	21	2.1	22	84	7	60	53	2	4	40	1.32
533359--533393	15	2.3	15	90	5	52	5	37	5	51	1.50
533350--533393	16	2.9	15	80	9	54	6	34	4	54	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534187--534268	31	2.9	26	78	15	83	57	19	3	19	1.55
534196--534258	31	2.0	31	87	0	90	53	22	4	19	1.63
537650--537733	38	2.2	39	83	12	111	55	15	2	26	1.52
539136--539176	21	1.9	22	85	5	57	39	2	2	56	1.26
540128--540212	43	2.0	43	86	9	120	34	0	20	45	1.51
540120--540217	21	4.5	22	76	12	80	32	0	21	45	1.52
543035--543081	20	2.3	20	92	0	76	29	25	10	34	1.90
543684--543732	20	2.5	20	86	0	62	30	10	32	26	1.89
545448--545503	27	2.1	27	93	0	94	14	21	10	53	1.70
550289--550360	22	3.1	22	74	16	74	69	0	0	30	0.89
550281--550347	11	5.5	12	68	21	50	70	0	0	29	0.88
550246--550352	18	5.8	18	77	11	92	68	0	0	31	0.90
550252--550366	18	6.3	17	71	16	79	68	0	0	31	0.90
550503--550590	22	4.0	22	96	0	158	45	0	27	27	1.54
550507--550601	10	8.8	10	75	15	82	46	0	28	25	1.53
551283--551307	13	1.9	13	100	0	50	32	0	4	64	1.12
561452--561476	11	2.3	11	100	0	50	0	8	0	92	0.40

Tables:   1   2

The End!