genome.fa.s14509.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014509.1 Kokia drynarioides strain JFW-HI SEQ_129548, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76039

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4229--4398	48	3.5	48	92	0	259	51	15	9	23	1.72
6999--7771	210	3.6	215	82	4	902	27	17	13	40	1.88
7791--8347	215	2.6	214	82	4	665	28	17	14	39	1.89
7200--12627	608	8.7	609	78	10	4173	28	16	14	40	1.87
8616--9010	192	2.1	191	86	3	553	28	15	13	42	1.85
8807--10897	216	9.9	216	76	9	1747	29	16	13	40	1.87
10018--10393	189	2.0	189	89	2	576	28	16	13	41	1.86
10203--10897	215	3.3	215	82	4	755	29	15	14	41	1.86
10704--11303	212	3.0	191	78	10	570	28	16	14	40	1.87
10886--12627	216	8.1	216	82	4	1919	29	16	13	40	1.87
10886--12627	428	4.1	427	83	5	2009	29	16	13	40	1.87
10886--12627	860	2.0	857	85	4	2330	29	16	13	40	1.87
12693--12757	15	4.3	15	76	7	60	24	24	27	23	2.00
12693--12749	30	1.9	30	85	0	78	26	26	26	21	1.99
14724--14894	48	3.5	48	87	2	236	24	8	13	53	1.68
22763--22924	48	3.4	48	92	0	243	25	9	13	51	1.70
23361--23517	80	2.0	79	92	3	262	35	21	15	28	1.94
28452--28494	15	2.9	15	89	0	50	25	23	23	27	2.00
28461--28494	15	2.3	15	94	0	59	26	26	20	26	1.99
29724--30739	215	4.7	215	81	4	1142	28	16	14	40	1.88
30525--31356	194	4.2	195	73	9	674	28	15	14	41	1.86
30127--31714	626	2.6	601	81	7	1682	29	16	14	40	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30341--31573	410	3.0	408	86	2	1598	29	16	14	40	1.87
31193--31714	216	2.4	215	83	3	667	29	17	13	39	1.88
32203--32265	32	2.0	32	87	0	90	33	9	17	39	1.82
33257--36634	216	15.7	216	82	3	3561	28	17	13	40	1.87
33257--36634	431	7.8	429	81	4	3562	28	17	13	40	1.87
36718--36752	15	2.3	15	90	9	54	20	22	31	25	1.98
38596--38948	190	1.9	189	84	3	485	39	12	17	30	1.87
38786--40655	215	8.8	213	81	6	1893	40	13	17	29	1.87
38786--40648	423	4.4	421	81	6	1997	40	13	17	29	1.87
38786--40655	638	2.9	626	81	6	2110	40	13	17	29	1.87
46972--46996	3	8.3	3	100	0	50	0	32	0	68	0.90
48580--50378	215	8.4	216	82	4	1938	41	13	16	27	1.87
48600--50378	429	4.1	432	82	4	1999	41	13	16	27	1.87
48580--50374	644	2.8	643	83	4	2105	41	13	16	27	1.87
51780--54952	215	14.9	214	76	9	2216	40	13	17	29	1.87
51780--54952	431	7.4	425	82	6	3367	40	13	17	29	1.87
52934--54953	215	9.4	215	83	3	2387	40	13	16	28	1.87
55273--55370	15	6.1	16	67	20	62	61	2	26	10	1.39
55337--55381	20	2.2	21	88	4	65	57	2	31	8	1.41
65344--65368	13	1.9	13	100	0	50	84	0	0	16	0.63
68378--73003	431	10.9	432	81	5	4658	28	16	13	40	1.88
68378--72615	216	19.8	216	81	4	4268	28	17	13	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71610--71974	194	1.9	194	81	1	453	26	16	14	41	1.88
72429--73099	194	3.5	188	74	12	648	28	16	14	41	1.86

Tables:   1

The End!