genome.fa.s14694.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014694.1 Kokia drynarioides strain JFW-HI SEQ_129733, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  570195

Tables:   1   2   

This is table  2  of  2  ( 210 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328170--328208	21	1.9	21	89	5	62	12	12	7	66	1.43
335445--335495	19	2.7	19	81	6	59	31	17	27	23	1.97
335503--335539	19	1.9	19	88	0	56	27	21	29	21	1.99
335570--335651	35	2.3	35	91	4	130	40	6	18	35	1.75
335602--335678	35	2.2	35	83	0	91	41	7	16	33	1.78
341113--341141	15	1.9	15	100	0	58	24	20	13	41	1.89
343051--343287	116	2.0	116	99	0	465	32	12	19	35	1.89
343638--343684	21	2.2	21	92	0	76	44	6	8	40	1.60
343645--343686	21	2.0	21	100	0	84	42	9	9	38	1.70
344847--344888	18	2.3	18	95	0	75	57	4	9	28	1.51
345655--345686	16	2.0	16	93	0	55	65	0	9	25	1.22
346384--346450	19	3.6	19	81	2	73	40	7	0	52	1.30
346253--346567	161	1.9	163	87	5	460	43	7	3	45	1.50
346426--346866	146	3.0	146	84	5	594	45	7	3	43	1.47
347243--347274	10	3.4	10	83	16	50	81	0	0	18	0.70
347241--347274	14	2.5	13	86	13	50	82	0	0	17	0.67
357674--357715	20	2.1	20	95	0	75	33	23	33	9	1.87
369339--369363	6	4.2	6	100	0	50	0	52	0	48	1.00
369366--369426	15	4.1	15	79	8	61	14	34	3	47	1.61
369371--369411	21	2.0	21	95	0	73	14	34	0	51	1.43
370003--370032	13	2.4	13	94	5	53	46	16	20	16	1.84
370003--370032	6	4.8	6	92	8	51	46	16	20	16	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370186--370210	2	12.5	2	100	0	50	48	0	0	52	1.00
376070--376180	32	3.5	32	81	0	114	41	6	7	45	1.57
382706--382764	24	2.5	24	94	0	100	37	22	28	11	1.89
383944--384002	31	1.9	31	86	3	84	28	15	30	25	1.96
386611--386648	13	3.0	13	84	3	51	52	15	0	31	1.43
386842--386869	2	14.0	2	100	0	56	50	0	0	50	1.00
387540--387573	16	2.1	16	100	0	68	50	14	11	23	1.76
390291--390333	21	2.0	23	86	9	63	51	6	6	34	1.56
390296--390339	21	2.0	22	82	4	54	56	4	6	31	1.46
403502--403539	13	3.0	13	84	3	51	52	15	0	31	1.43
404078--404119	15	2.5	17	77	22	52	57	0	4	38	1.20
404502--404550	22	2.2	23	85	3	64	26	0	20	53	1.46
407041--407091	20	2.5	21	72	15	61	41	0	25	33	1.56
407351--407404	28	1.9	28	84	0	72	38	9	11	40	1.73
411104--411307	39	5.2	39	79	2	212	39	19	16	24	1.92
411104--411331	78	2.9	78	73	3	235	38	20	17	24	1.93
413367--413394	14	2.0	14	100	0	56	35	0	42	21	1.53
418017--418044	7	4.0	7	100	0	56	0	28	0	71	0.86
429166--429222	8	5.9	10	72	27	52	59	0	0	40	0.97
429283--429335	19	2.7	20	73	8	63	60	3	0	35	1.15
429332--429375	19	2.2	19	84	8	52	70	4	0	25	1.06
429566--429605	14	2.8	14	84	3	53	17	2	0	80	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429964--430128	20	8.4	20	64	23	59	33	1	3	61	1.22
429997--430050	24	2.2	24	81	9	65	29	0	1	68	1.00
429958--430045	32	2.6	33	74	13	90	30	0	3	65	1.09
429953--430062	58	2.0	53	85	8	148	30	0	3	64	1.17
430062--430136	29	2.6	27	77	8	69	34	2	2	60	1.25
430026--430124	40	2.5	39	82	8	112	36	3	2	58	1.25
430056--430128	19	3.8	19	73	12	60	35	2	1	60	1.20
433069--433194	21	6.1	20	79	6	108	31	19	30	18	1.95
433067--433194	42	3.0	41	80	6	132	32	19	30	17	1.95
433082--433311	63	3.7	63	78	3	221	33	20	29	17	1.95
433081--433311	42	5.5	42	78	5	191	33	19	29	17	1.95
433097--433261	21	7.9	21	86	0	159	35	19	26	18	1.95
437606--437637	2	16.0	2	93	0	55	46	0	0	53	1.00
439110--439176	16	4.2	16	75	7	73	47	1	20	29	1.59
439155--439244	46	2.0	44	87	8	128	40	3	14	42	1.62
439899--439956	30	1.9	31	93	6	102	20	37	0	41	1.53
439909--439970	30	2.1	30	81	6	72	24	40	0	35	1.55
445724--445781	31	1.9	30	86	10	82	46	3	1	48	1.29
445710--445783	31	2.6	28	76	19	73	44	4	1	50	1.29
445854--445880	2	13.5	2	100	0	54	51	0	0	48	1.00
446845--446912	23	2.9	23	82	2	91	29	13	16	41	1.86
446896--446941	23	2.0	23	87	8	67	43	10	13	32	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
472622--472675	21	2.6	21	75	0	54	33	24	16	25	1.96
483083--483130	16	2.8	18	76	23	59	6	33	0	60	1.22
483083--483131	17	2.8	18	77	22	59	6	32	0	61	1.21
491342--491371	2	15.0	2	92	0	51	0	50	3	46	1.18
492279--492352	20	3.5	20	77	14	69	74	2	20	2	1.07
492648--492681	11	3.0	11	83	8	50	26	0	2	70	1.01
494143--494249	43	2.5	43	83	6	137	31	14	9	44	1.76
514487--514710	79	2.8	79	80	6	229	21	21	25	31	1.98
518094--518328	42	5.6	42	85	4	278	32	10	26	30	1.89
518124--518387	42	6.2	42	82	6	200	32	10	26	29	1.91
521932--521987	20	2.8	20	78	10	62	53	8	16	21	1.69
524583--524611	14	2.1	14	100	0	58	37	6	6	48	1.57
528930--528970	18	2.5	17	88	11	59	51	0	7	41	1.30
529447--529491	20	2.2	20	88	7	65	55	2	6	35	1.38
530689--530753	33	2.0	31	85	11	87	29	0	1	69	0.98
530689--530741	26	2.1	25	86	10	72	26	0	1	71	0.96
538733--538774	21	2.0	21	100	0	84	47	0	14	38	1.44
543375--543410	18	2.1	18	89	5	56	58	11	13	16	1.63
543514--543567	21	2.7	21	77	16	60	1	25	7	64	1.30
543844--543883	18	2.2	19	86	13	57	5	37	7	50	1.53
549712--549816	52	2.0	52	94	0	183	20	20	21	37	1.95
551421--551446	13	2.0	13	100	0	52	0	0	38	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
555397--555456	18	3.4	17	79	9	50	55	15	10	20	1.68
555425--555468	18	2.5	18	81	3	54	59	13	9	18	1.60

Tables:   1   2

The End!