genome.fa.s14705.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014705.1 Kokia drynarioides strain JFW-HI SEQ_129744, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  370394

Tables:   1   2   

This is table  2  of  2  ( 174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
224077--224258	91	2.0	91	98	0	355	34	12	14	38	1.84
225103--225169	31	2.2	30	84	7	82	44	2	5	46	1.43
227491--227525	17	2.0	17	88	5	52	51	0	0	48	1.00
227522--227616	41	2.4	41	81	13	103	36	2	3	57	1.26
227939--227980	21	2.0	22	85	4	59	61	2	7	28	1.35
230268--230430	29	5.7	29	78	5	170	26	9	23	40	1.85
230278--230418	57	2.4	58	82	3	169	26	8	23	41	1.83
230287--230457	86	2.0	86	81	2	200	25	10	23	40	1.86
232357--232421	34	1.9	34	81	6	78	20	27	26	26	1.99
239802--239900	24	4.1	24	85	0	126	27	10	8	54	1.62
239808--239900	48	1.9	48	88	0	141	27	9	7	54	1.60
241817--241867	24	2.1	24	88	0	75	23	11	9	54	1.66
242848--242874	6	4.5	6	100	0	54	81	0	0	18	0.69
243955--245450	562	2.7	551	83	6	1821	40	13	13	32	1.84
246141--246343	40	5.1	40	81	0	208	22	13	23	40	1.89
246141--246407	80	3.4	79	79	2	257	25	13	20	40	1.89
258265--258339	37	2.0	37	97	0	141	44	1	32	22	1.62
259767--259938	50	3.4	51	80	6	170	31	14	14	38	1.86
259793--259938	51	2.8	53	82	7	160	31	15	14	39	1.87
260615--260694	36	2.2	36	77	4	90	38	22	13	25	1.91
276860--276893	8	4.2	8	89	10	52	61	0	0	38	0.96
277766--277800	15	2.3	15	90	0	52	57	5	0	37	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277752--277872	16	7.4	16	69	15	52	44	4	8	42	1.53
284186--284344	87	1.8	86	86	4	230	25	15	21	37	1.92
288753--288885	70	1.9	67	83	4	167	32	10	12	45	1.75
290304--290356	21	2.8	18	76	15	52	43	5	3	47	1.45
300265--300326	10	6.0	10	75	19	56	67	3	3	25	1.20
300286--300324	15	2.5	15	83	4	51	71	2	0	25	0.98
302816--302938	43	2.9	42	79	7	131	35	17	11	34	1.86
310843--310944	43	2.4	43	91	0	159	37	20	12	29	1.90
314500--314543	21	2.0	21	86	4	61	36	22	18	22	1.95
317631--317674	21	2.0	21	91	4	70	38	20	15	25	1.92
324361--324394	16	2.1	17	88	5	52	64	5	2	26	1.30
328704--328978	117	2.3	118	89	1	419	30	4	32	33	1.76
328706--328978	58	4.7	59	89	1	406	30	4	31	33	1.76
329523--329547	12	2.1	12	100	0	50	32	44	0	24	1.54
329988--330017	4	7.5	4	100	0	60	23	0	0	76	0.78
332331--332397	33	2.1	32	89	8	102	38	0	4	56	1.19
342221--342441	118	1.9	118	87	1	327	30	15	20	33	1.93
344514--344654	70	2.0	70	100	0	282	39	9	21	29	1.85
347016--347060	17	2.6	17	78	0	54	31	2	4	62	1.27
347543--347579	12	3.2	12	96	3	67	67	0	0	32	0.91
349804--349869	6	11.2	6	74	9	64	42	3	3	51	1.32
349796--349869	17	4.2	17	84	6	94	43	2	2	51	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350609--350648	3	13.7	3	89	10	57	67	0	0	32	0.91
351736--352106	29	12.6	29	75	13	289	32	26	4	35	1.77
351736--352063	29	11.1	29	76	10	294	32	26	4	36	1.76
351736--352058	59	5.5	59	79	6	352	33	26	4	36	1.76
355200--355258	30	2.0	29	86	3	82	33	3	15	47	1.62
362465--362516	20	2.5	20	87	6	68	48	1	0	50	1.12
362465--362528	22	3.0	21	84	9	76	50	1	0	48	1.10
362465--362528	21	3.0	20	86	6	74	50	1	0	48	1.10
364890--365067	38	4.7	38	88	1	214	33	20	16	29	1.95
368401--368493	46	2.0	47	89	2	143	19	16	29	35	1.93

Tables:   1   2

The End!