genome.fa.s14718.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01014718.1 Kokia drynarioides strain JFW-HI SEQ_129757, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80482

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
381--483	41	2.5	41	93	0	179	34	11	25	28	1.91
13061--13109	22	2.3	22	86	10	66	57	2	8	32	1.40
12963--13561	122	5.0	122	86	5	835	44	7	10	38	1.67
12963--13561	240	2.5	239	86	5	843	44	7	10	38	1.67
14750--14883	66	2.0	66	98	0	259	34	10	21	33	1.88
18025--18510	123	4.0	122	91	1	744	42	8	11	37	1.70
18370--18416	22	2.2	21	81	11	51	55	2	12	29	1.49
19871--19936	31	2.1	31	83	11	80	60	10	18	10	1.57
22422--22487	21	3.1	21	79	12	73	37	27	10	24	1.88
24265--24296	2	16.0	2	100	0	64	50	0	0	50	1.00
36163--36217	19	2.9	19	71	15	51	29	7	3	60	1.41
44702--44738	18	2.0	19	89	5	58	8	13	5	72	1.24
50711--50752	22	1.9	22	85	0	57	21	19	9	50	1.75
52195--52232	19	2.0	19	89	0	58	44	0	18	36	1.50
52286--52386	47	2.1	47	89	5	159	30	14	21	32	1.94
60017--60060	22	2.0	23	90	4	72	56	0	0	43	0.99
60097--60146	12	3.8	14	77	20	54	58	0	0	42	0.98
69728--69775	25	1.9	25	87	8	71	18	10	12	58	1.62
70505--70757	50	5.1	50	65	16	130	35	19	20	24	1.95
70473--70842	198	1.9	200	84	1	510	35	18	20	25	1.95
70473--70842	100	3.7	100	79	4	433	35	18	20	25	1.95
70296--70846	100	5.6	100	76	8	410	36	18	18	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75568--75649	29	2.8	28	80	7	74	65	4	1	28	1.20
76216--76314	19	5.2	18	73	15	76	29	2	4	64	1.23
76223--76316	38	2.5	38	83	11	122	30	2	3	63	1.21
76225--76314	37	2.4	37	83	10	112	30	2	3	64	1.22
76366--76416	9	5.2	10	79	13	52	23	0	3	72	1.01
76340--76416	39	2.0	37	80	14	86	27	1	2	68	1.10
76377--76402	10	2.6	10	100	0	52	26	0	7	65	1.20
76364--76417	20	2.8	20	74	2	65	24	0	3	72	1.01
78321--80479	216	10.1	215	82	3	2453	40	14	16	27	1.88
78313--80479	429	5.0	429	83	4	2591	40	14	16	27	1.88
78313--80479	645	3.4	642	83	3	2818	40	14	16	27	1.88

Tables:   1

The End!